LINC02352 (long intergenic non-protein coding RNA 2352)

Gene: LINC02352 (long intergenic non-protein coding RNA 2352) Homo sapiens

Analyze

Symbol:

LINC02352

Name:

long intergenic non-protein coding RNA 2352

RGD ID:

12798886

HGNC Page

HGNC:53274

Description:

ASSOCIATED WITH Autism; autistic disorder; chromosome 15q13.3 microdeletion syndrome; INTERACTS WITH formaldehyde

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	31,216,021 - 31,225,007 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	31,215,622 - 31,224,445 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	31,508,224 - 31,517,210 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	15	q13.3	NCBI
CHM1_1	15	31,499,116 - 31,508,090 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	29,010,127 - 29,019,100 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (IAGP)

chromosome 15q13.3 microdeletion syndrome (IAGP)

schizophrenia (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

formaldehyde (EXP)

Phenotype Annotations Click to see Annotation Detail View

Human Phenotype

Autism (IAGP)

Schizophrenia (IAGP)

References

Genomics

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32607357)x3	copy number gain	See cases [RCV000050899]	Chr15:30361674..32607357 [GRCh38] Chr15:30653877..32899558 [GRCh37] Chr15:28441169..30686850 [NCBI36] Chr15:15q13.2-13.3	uncertain significance\|conflicting data from submitters
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32607357)x1	copy number loss	See cases [RCV000050900]	Chr15:30361674..32607357 [GRCh38] Chr15:30653877..32899558 [GRCh37] Chr15:28441169..30686850 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30438310-32569425)x3	copy number gain	See cases [RCV000050375]	Chr15:30438310..32569425 [GRCh38] Chr15:30730513..32861626 [GRCh37] Chr15:28517805..30648918 [NCBI36] Chr15:15q13.2-13.3	uncertain significance\|conflicting data from submitters
GRCh38/hg38 15q13.2-13.3(chr15:30438310-32569425)x1	copy number loss	See cases [RCV000050376]	Chr15:30438310..32569425 [GRCh38] Chr15:30730513..32861626 [GRCh37] Chr15:28517805..30648918 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30662523-32217725)x3	copy number gain	See cases [RCV000050441]	Chr15:30662523..32217725 [GRCh38] Chr15:30954726..32509926 [GRCh37] Chr15:28742018..30297218 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30662523-32217725)x1	copy number loss	See cases [RCV000050442]	Chr15:30662523..32217725 [GRCh38] Chr15:30954726..32509926 [GRCh37] Chr15:28742018..30297218 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30438310-32217725)x1	copy number loss	See cases [RCV000050511]	Chr15:30438310..32217725 [GRCh38] Chr15:30730513..32509926 [GRCh37] Chr15:28517805..30297218 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.1-13.3(chr15:28314197-32343758)x1	copy number loss	See cases [RCV000050564]	Chr15:28314197..32343758 [GRCh38] Chr15:28579796..32635959 [GRCh37] Chr15:26232938..30423251 [NCBI36] Chr15:15q13.1-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30527262-32217725)x1	copy number loss	See cases [RCV000050599]	Chr15:30527262..32217725 [GRCh38] Chr15:30819465..32509926 [GRCh37] Chr15:28606757..30297218 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30662523-32607357)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050608]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050608]\|See cases [RCV000050608]	Chr15:30662523..32607357 [GRCh38] Chr15:30954726..32899558 [GRCh37] Chr15:28742018..30686850 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30662523-32607357)x1	copy number loss	See cases [RCV000050609]	Chr15:30662523..32607357 [GRCh38] Chr15:30954726..32899558 [GRCh37] Chr15:28742018..30686850 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30109224-32149250)x3	copy number gain	See cases [RCV000051334]	Chr15:30109224..32149250 [GRCh38] Chr15:30401427..32441451 [GRCh37] Chr15:28188719..30228743 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30361474-32607498)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051335]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051335]\|See cases [RCV000051335]	Chr15:30361474..32607498 [GRCh38] Chr15:30653677..32899699 [GRCh37] Chr15:28440969..30686991 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32343758)x3	copy number gain	See cases [RCV000051336]	Chr15:30361674..32343758 [GRCh38] Chr15:30653877..32635959 [GRCh37] Chr15:28441169..30423251 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32146742)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051338]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051338]\|See cases [RCV000051338]	Chr15:30361674..32146742 [GRCh38] Chr15:30653877..32438943 [GRCh37] Chr15:28441169..30226235 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30438110-32607498)x3	copy number gain	See cases [RCV000051339]	Chr15:30438110..32607498 [GRCh38] Chr15:30730313..32899699 [GRCh37] Chr15:28517605..30686991 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30640878-32222779)x3	copy number gain	See cases [RCV000051351]	Chr15:30640878..32222779 [GRCh38] Chr15:30933081..32514980 [GRCh37] Chr15:28720373..30302272 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32630901)x1	copy number loss	See cases [RCV000051585]	Chr15:30361674..32630901 [GRCh38] Chr15:30653877..32923102 [GRCh37] Chr15:28441169..30710394 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32326182)x1	copy number loss	See cases [RCV000052431]	Chr15:30361674..32326182 [GRCh38] Chr15:30653877..32618383 [GRCh37] Chr15:28441169..30405675 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32222779)x1	copy number loss	See cases [RCV000052433]	Chr15:30361674..32222779 [GRCh38] Chr15:30653877..32514980 [GRCh37] Chr15:28441169..30302272 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32217725)x1	copy number loss	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052435]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052435]\|See cases [RCV000052435]	Chr15:30361674..32217725 [GRCh38] Chr15:30653877..32509926 [GRCh37] Chr15:28441169..30297218 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30527062-32217866)x1	copy number loss	See cases [RCV000052436]	Chr15:30527062..32217866 [GRCh38] Chr15:30819265..32510067 [GRCh37] Chr15:28606557..30297359 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30527262-32343758)x1	copy number loss	See cases [RCV000052452]	Chr15:30527262..32343758 [GRCh38] Chr15:30819465..32635959 [GRCh37] Chr15:28606757..30423251 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30592358-32121422)x1	copy number loss	See cases [RCV000052453]	Chr15:30592358..32121422 [GRCh38] Chr15:30884561..32413623 [GRCh37] Chr15:28671853..30200915 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30614351-32606466)x1	copy number loss	See cases [RCV000052455]	Chr15:30614351..32606466 [GRCh38] Chr15:30906554..32898667 [GRCh37] Chr15:28693846..30685959 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30634533-32121422)x1	copy number loss	See cases [RCV000052458]	Chr15:30634533..32121422 [GRCh38] Chr15:30926736..32413623 [GRCh37] Chr15:28714028..30200915 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30662323-32217866)x1	copy number loss	See cases [RCV000052461]	Chr15:30662323..32217866 [GRCh38] Chr15:30954526..32510067 [GRCh37] Chr15:28741818..30297359 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30662523-32343758)x1	copy number loss	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052463]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052463]\|See cases [RCV000052463]	Chr15:30662523..32343758 [GRCh38] Chr15:30954726..32635959 [GRCh37] Chr15:28742018..30423251 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30750713-32217725)x1	copy number loss	See cases [RCV000052464]	Chr15:30750713..32217725 [GRCh38] Chr15:31042916..32509926 [GRCh37] Chr15:28830208..30297218 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30822844-32149250)x1	copy number loss	See cases [RCV000052465]	Chr15:30822844..32149250 [GRCh38] Chr15:31115047..32441451 [GRCh37] Chr15:28902339..30228743 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30109224-32606466)x1	copy number loss	See cases [RCV000052426]	Chr15:30109224..32606466 [GRCh38] Chr15:30401427..32898667 [GRCh37] Chr15:28188719..30685959 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30822844-32606466)x1	copy number loss	See cases [RCV000052481]	Chr15:30822844..32606466 [GRCh38] Chr15:31115047..32898667 [GRCh37] Chr15:28902339..30685959 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32607357)x4	copy number gain	See cases [RCV000133595]	Chr15:30361674..32607357 [GRCh38] Chr15:30653877..32899558 [GRCh37] Chr15:28441169..30686850 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.1-13.3(chr15:28961114-32343758)x3	copy number gain	See cases [RCV000133742]	Chr15:28961114..32343758 [GRCh38] Chr15:29253317..32635959 [GRCh37] Chr15:27040609..30423251 [NCBI36] Chr15:15q13.1-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30662521-32217731)x1	copy number loss	See cases [RCV000134823]	Chr15:30662521..32217731 [GRCh38] Chr15:30954724..32509932 [GRCh37] Chr15:28742016..30297224 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30797731-32150818)x3	copy number gain	See cases [RCV000135330]	Chr15:30797731..32150818 [GRCh38] Chr15:31089934..32443019 [GRCh37] Chr15:28877226..30230311 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30750713-32607357)x1	copy number loss	See cases [RCV000135446]	Chr15:30750713..32607357 [GRCh38] Chr15:31042916..32899558 [GRCh37] Chr15:28830208..30686850 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30438310-32607357)x3	copy number gain	See cases [RCV000135452]	Chr15:30438310..32607357 [GRCh38] Chr15:30730513..32899558 [GRCh37] Chr15:28517805..30686850 [NCBI36] Chr15:15q13.2-13.3	conflicting interpretations of pathogenicity\|conflicting data from submitters
GRCh38/hg38 15q13.2-13.3(chr15:30662521-32217731)x3	copy number gain	See cases [RCV000134822]	Chr15:30662521..32217731 [GRCh38] Chr15:30954724..32509932 [GRCh37] Chr15:28742016..30297224 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32222779)x3	copy number gain	See cases [RCV000135725]	Chr15:30361674..32222779 [GRCh38] Chr15:30653877..32514980 [GRCh37] Chr15:28441169..30302272 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30361674-31572487)x3	copy number gain	See cases [RCV000135791]	Chr15:30361674..31572487 [GRCh38] Chr15:30653877..31864690 [GRCh37] Chr15:28441169..29651982 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30361656-32150923)x3	copy number gain	See cases [RCV000135974]	Chr15:30361656..32150923 [GRCh38] Chr15:30653859..32443124 [GRCh37] Chr15:28441151..30230416 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32569425)x1	copy number loss	See cases [RCV000136622]	Chr15:30361674..32569425 [GRCh38] Chr15:30653877..32861626 [GRCh37] Chr15:28441169..30648918 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30291263-32217725)x3	copy number gain	See cases [RCV000136965]	Chr15:30291263..32217725 [GRCh38] Chr15:30583466..32509926 [GRCh37] Chr15:28370758..30297218 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32414682)x3	copy number gain	See cases [RCV000137254]	Chr15:30361674..32414682 [GRCh38] Chr15:30653877..32706883 [GRCh37] Chr15:28441169..30494175 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32621998)x1	copy number loss	See cases [RCV000137266]	Chr15:30361674..32621998 [GRCh38] Chr15:30653877..32914199 [GRCh37] Chr15:28441169..30701491 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30629714-32326182)x3	copy number gain	See cases [RCV000137535]	Chr15:30629714..32326182 [GRCh38] Chr15:30921917..32618383 [GRCh37] Chr15:28709209..30405675 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30527262-32621998)x3	copy number gain	See cases [RCV000137855]	Chr15:30527262..32621998 [GRCh38] Chr15:30819465..32914199 [GRCh37] Chr15:28606757..30701491 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30629714-32621998)x1	copy number loss	See cases [RCV000138247]	Chr15:30629714..32621998 [GRCh38] Chr15:30921917..32914199 [GRCh37] Chr15:28709209..30701491 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.1-13.3(chr15:28744504-32275124)x3	copy number gain	See cases [RCV000138283]	Chr15:28744504..32275124 [GRCh38] Chr15:28989650..32567325 [GRCh37] Chr15:26788691..30354617 [NCBI36] Chr15:15q13.1-13.3	uncertain significance
GRCh38/hg38 15q13.1-13.3(chr15:28730988-32275124)x3	copy number gain	See cases [RCV000138268]	Chr15:28730988..32275124 [GRCh38] Chr15:28976134..32567325 [GRCh37] Chr15:26775175..30354617 [NCBI36] Chr15:15q13.1-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30629714-32247465)x3	copy number gain	See cases [RCV000139177]	Chr15:30629714..32247465 [GRCh38] Chr15:30921917..32539666 [GRCh37] Chr15:28709209..30326958 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30629714-32247465)x1	copy number loss	See cases [RCV000139178]	Chr15:30629714..32247465 [GRCh38] Chr15:30921917..32539666 [GRCh37] Chr15:28709209..30326958 [NCBI36] Chr15:15q13.2-13.3	pathogenic\|conflicting data from submitters
GRCh38/hg38 15q13.2-13.3(chr15:30662521-32150923)x1	copy number loss	See cases [RCV000139322]	Chr15:30662521..32150923 [GRCh38] Chr15:30954724..32443124 [GRCh37] Chr15:28742016..30230416 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30662521-32569411)x1	copy number loss	See cases [RCV000139327]	Chr15:30662521..32569411 [GRCh38] Chr15:30954724..32861612 [GRCh37] Chr15:28742016..30648904 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.1-13.3(chr15:28744504-32222779)x1	copy number loss	See cases [RCV000139417]	Chr15:28744504..32222779 [GRCh38] Chr15:28989650..32514980 [GRCh37] Chr15:26788691..30302272 [NCBI36] Chr15:15q13.1-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30527262-32222779)x3	copy number gain	See cases [RCV000140689]	Chr15:30527262..32222779 [GRCh38] Chr15:30819465..32514980 [GRCh37] Chr15:28606757..30302272 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30527262-32222779)x1	copy number loss	See cases [RCV000140690]	Chr15:30527262..32222779 [GRCh38] Chr15:30819465..32514980 [GRCh37] Chr15:28606757..30302272 [NCBI36] Chr15:15q13.2-13.3	pathogenic\|likely pathogenic\|conflicting data from submitters
GRCh38/hg38 15q13.2-13.3(chr15:30797731-32170441)x1	copy number loss	See cases [RCV000141147]	Chr15:30797731..32170441 [GRCh38] Chr15:31089934..32462642 [GRCh37] Chr15:28877226..30249934 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30217122-32217725)x1	copy number loss	See cases [RCV000141477]	Chr15:30217122..32217725 [GRCh38] Chr15:30509325..32509926 [GRCh37] Chr15:28296617..30297218 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30217122-32607357)x1	copy number loss	See cases [RCV000141482]	Chr15:30217122..32607357 [GRCh38] Chr15:30509325..32899558 [GRCh37] Chr15:28296617..30686850 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30094195-32151843)x3	copy number gain	See cases [RCV000141654]	Chr15:30094195..32151843 [GRCh38] Chr15:30386398..32444044 [GRCh37] Chr15:28173690..30231336 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30621371-32151912)x3	copy number gain	See cases [RCV000142144]	Chr15:30621371..32151912 [GRCh38] Chr15:30913574..32444113 [GRCh37] Chr15:28700866..30231405 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30621371-32147323)x3	copy number gain	See cases [RCV000142184]	Chr15:30621371..32147323 [GRCh38] Chr15:30913574..32439524 [GRCh37] Chr15:28700866..30226816 [NCBI36] Chr15:15q13.2-13.3	uncertain significance\|conflicting data from submitters
GRCh38/hg38 15q13.2-13.3(chr15:30781532-32154629)x1	copy number loss	See cases [RCV000142300]	Chr15:30781532..32154629 [GRCh38] Chr15:31073735..32446830 [GRCh37] Chr15:28861027..30234122 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30629714-32569425)x3	copy number gain	See cases [RCV000142792]	Chr15:30629714..32569425 [GRCh38] Chr15:30921917..32861626 [GRCh37] Chr15:28709209..30648918 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30629714-32222779)x1	copy number loss	See cases [RCV000142808]	Chr15:30629714..32222779 [GRCh38] Chr15:30921917..32514980 [GRCh37] Chr15:28709209..30302272 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30629714-32222779)x3	copy number gain	See cases [RCV000142809]	Chr15:30629714..32222779 [GRCh38] Chr15:30921917..32514980 [GRCh37] Chr15:28709209..30302272 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32569425)x3	copy number gain	See cases [RCV000142669]	Chr15:30361674..32569425 [GRCh38] Chr15:30653877..32861626 [GRCh37] Chr15:28441169..30648918 [NCBI36] Chr15:15q13.2-13.3	uncertain significance\|conflicting data from submitters
GRCh38/hg38 15q13.2-13.3(chr15:30629714-32275124)x1	copy number loss	See cases [RCV000143262]	Chr15:30629714..32275124 [GRCh38] Chr15:30921917..32567325 [GRCh37] Chr15:28709209..30354617 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30781466-32154629)x3	copy number gain	See cases [RCV000143499]	Chr15:30781466..32154629 [GRCh38] Chr15:31073669..32446830 [GRCh37] Chr15:28860961..30234122 [NCBI36] Chr15:15q13.2-13.3	uncertain significance\|conflicting data from submitters
GRCh38/hg38 15q13.2-13.3(chr15:30781465-32154629)x1	copy number loss	See cases [RCV000143747]	Chr15:30781465..32154629 [GRCh38] Chr15:31073668..32446830 [GRCh37] Chr15:28860960..30234122 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30662523-32217725)x1	copy number loss	See cases [RCV000148066]	Chr15:30662523..32217725 [GRCh38] Chr15:30954726..32509926 [GRCh37] Chr15:28742018..30297218 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30527262-32217725)x1	copy number loss	See cases [RCV000148065]	Chr15:30527262..32217725 [GRCh38] Chr15:30819465..32509926 [GRCh37] Chr15:28606757..30297218 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30361674-32607357)x3	copy number gain	See cases [RCV000148165]	Chr15:30361674..32607357 [GRCh38] Chr15:30653877..32899558 [GRCh37] Chr15:28441169..30686850 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30438310-32569425)x3	copy number gain	See cases [RCV000148179]	Chr15:30438310..32569425 [GRCh38] Chr15:30730513..32861626 [GRCh37] Chr15:28517805..30648918 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.2-13.3(chr15:30662523-32217725)x3	copy number gain	See cases [RCV000148196]	Chr15:30662523..32217725 [GRCh38] Chr15:30954726..32509926 [GRCh37] Chr15:28742018..30297218 [NCBI36] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q13.1-13.3(chr15:28918473-32606466)x3	copy number gain	See cases [RCV000051332]	Chr15:28918473..32606466 [GRCh38] Chr15:29210676..32898667 [GRCh37] Chr15:26997968..30685959 [NCBI36] Chr15:15q13.1-13.3	uncertain significance
GRCh38/hg38 15q13.1-13.3(chr15:28918473-32149250)x1	copy number loss	See cases [RCV000052412]	Chr15:28918473..32149250 [GRCh38] Chr15:29210676..32441451 [GRCh37] Chr15:26997968..30228743 [NCBI36] Chr15:15q13.1-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30361674-31317476)x1	copy number loss	See cases [RCV000052430]	Chr15:30361674..31317476 [GRCh38] Chr15:30653877..31609679 [GRCh37] Chr15:28441169..29396971 [NCBI36] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.3(chr15:30969632-31317417)x3	copy number gain	See cases [RCV000140616]	Chr15:30969632..31317417 [GRCh38] Chr15:31261835..31609620 [GRCh37] Chr15:29049127..29396912 [NCBI36] Chr15:15q13.3	benign
GRCh38/hg38 15q11.2-13.3(chr15:23319714-32607357)x3	copy number gain	See cases [RCV000051112]	Chr15:23319714..32607357 [GRCh38] Chr15:22698522..32899558 [GRCh37] Chr15:20249886..30686850 [NCBI36] Chr15:15q11.2-13.3	pathogenic
GRCh38/hg38 15q11.1-13.3(chr15:20002460-32121422)x3	copy number gain	See cases [RCV000052340]	Chr15:20002460..32121422 [GRCh38] Chr15:20207713..32413623 [GRCh37] Chr15:18467727..30200915 [NCBI36] Chr15:15q11.1-13.3	pathogenic
GRCh38/hg38 15q11.2-13.3(chr15:23319714-32607498)x4	copy number gain	See cases [RCV000053208]	Chr15:23319714..32607498 [GRCh38] Chr15:22698322..32899699 [GRCh37] Chr15:20249686..30686991 [NCBI36] Chr15:15q11.2-13.3	pathogenic
GRCh38/hg38 15q11.2-14(chr15:23319714-38089582)x1	copy number loss	See cases [RCV000135953]	Chr15:23319714..38089582 [GRCh38] Chr15:22698522..38381783 [GRCh37] Chr15:20249886..36169075 [NCBI36] Chr15:15q11.2-14	pathogenic
GRCh38/hg38 15q11.2-13.1(chr15:23319714-32384654)x1	copy number loss	See cases [RCV000138308]	Chr15:23319714..32384654 [GRCh38] Chr15:22765628..32676855 [GRCh37] Chr15:20316992..30464147 [NCBI36] Chr15:15q11.2-13.1	pathogenic
GRCh38/hg38 15q11.2-14(chr15:23319714-38545325)x3	copy number gain	See cases [RCV000138530]	Chr15:23319714..38545325 [GRCh38] Chr15:22765628..38837526 [GRCh37] Chr15:20316992..36624818 [NCBI36] Chr15:15q11.2-14	pathogenic
GRCh38/hg38 15q11.2-13.1(chr15:23319714-32607357)x3	copy number gain	See cases [RCV000138622]	Chr15:23319714..32607357 [GRCh38] Chr15:22765637..32899558 [GRCh37] Chr15:20317001..30686850 [NCBI36] Chr15:15q11.2-13.1	pathogenic
GRCh38/hg38 15q11.2-13.1(chr15:23319714-32217731)x3	copy number gain	See cases [RCV000139610]	Chr15:23319714..32217731 [GRCh38] Chr15:22765637..32509932 [GRCh37] Chr15:20317001..30297224 [NCBI36] Chr15:15q11.2-13.1	pathogenic
GRCh38/hg38 15q11.1-13.3(chr15:19840581-32621939)x4	copy number gain	See cases [RCV000140623]	Chr15:19840581..32621939 [GRCh38] Chr15:20045834..32914140 [GRCh37] Chr15:18305848..30701432 [NCBI36] Chr15:15q11.1-13.3	pathogenic
GRCh38/hg38 15q11.2-14(chr15:25033869-37204304)x1	copy number loss	See cases [RCV000143205]	Chr15:25033869..37204304 [GRCh38] Chr15:25279016..37496505 [GRCh37] Chr15:22830109..35283797 [NCBI36] Chr15:15q11.2-14	pathogenic
GRCh38/hg38 15q11.2-13.3(chr15:23328044-32151843)x3	copy number gain	See cases [RCV000143653]	Chr15:23328044..32151843 [GRCh38] Chr15:23282829..32444044 [GRCh37] Chr15:20834270..30231336 [NCBI36] Chr15:15q11.2-13.3	pathogenic
NC_000015.10:g.(?_30325774)_(32194551_?)del	deletion	Schizophrenia [RCV000754161]	Chr15:30325774..32194551 [GRCh38] Chr15:15q13.2-13.3	pathogenic
Single allele	duplication	Schizophrenia [RCV000754162]	Chr15:30506022..32161746 [GRCh38] Chr15:15q13.2-13.3	likely pathogenic
Single allele	duplication	Schizophrenia [RCV000754164]	Chr15:30568981..32151126 [GRCh38] Chr15:15q13.2-13.3	likely pathogenic
Single allele	duplication	Autism [RCV000754147]	Chr15:22420897..32130343 [GRCh38] Chr15:15q11.2-13.3	pathogenic
NC_000015.10:g.(?_30568981)_(32151126_?)del	deletion	Autism [RCV000754163]	Chr15:30568981..32151126 [GRCh38] Chr15:15q13.2-13.3	pathogenic
NC_000015.10:g.(?_30568981)_(32318632_?)del	deletion	Autism [RCV000754165]	Chr15:30568981..32318632 [GRCh38] Chr15:15q13.2-13.3	pathogenic
Single allele	deletion	Chromosome 15q13.3 microdeletion syndrome [RCV002280355]	Chr15:30626003..32111997 [GRCh38] Chr15:15q13.2-13.3	pathogenic
GRCh38/hg38 15q13.2-13.3(chr15:30866083-32146743)	copy number gain	Anomalous pulmonary venous return [RCV003223577]	Chr15:30866083..32146743 [GRCh38] Chr15:15q13.2-13.3	uncertain significance
GRCh38/hg38 15q11.2-13.3(chr15:22612582-32116118)	copy number gain	15q11q13 microduplication syndrome [RCV003985066]	Chr15:22612582..32116118 [GRCh38] Chr15:15q11.2-13.3	pathogenic

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	319
Count of miRNA genes:	304
Interacting mature miRNAs:	311
Transcripts:	ENST00000557928, ENST00000559292
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

visual system

adipose tissue

appendage

entire extraembryonic component

pharyngeal arch

High

Medium

347

Low

2327

2453

1436

515

1862

363

2946

1227

3300

318

1185

1459

157

1181

1723

Below cutoff

100

521

284

107

100

1373

941

251

117

1045

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_135834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC012236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC243586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AW136423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000557928

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	31,216,021 - 31,224,445 (+)	Ensembl

RefSeq Acc Id:

ENST00000559292

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	31,216,020 - 31,220,720 (+)	Ensembl

RefSeq Acc Id:

ENST00000654993

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	15	31,215,622 - 31,220,945 (+)	Ensembl

RefSeq Acc Id:

NR_135834

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	31,216,021 - 31,225,007 (+)	NCBI
CHM1_1	15	31,499,116 - 31,508,090 (+)	NCBI
T2T-CHM13v2.0	15	29,010,127 - 29,019,100 (+)	NCBI

Sequence:

show sequence

CGGCCGCCGCCAAGCAGATACAAATGTTTATTTGGTCTGACTTTGAAATACCTCGGAGCAGCTG
AAATAATTGAAGGCAGCCCTGTAAGAAGCAGCACTTCCAGACCTTCTCACGGGCAAACCCTCTG
CTGGGACCGCCAAGGGCCCCCGCGAGACACCTGAGGGTCAGCACAGCCCCTCCCTCCCTGTGCC
GTGCTGGCCGTGCCGCAGCTGGTCACCCGCACGAGGACCTCGAGATTGCCCTGCGGACTGGCAC
TTCTCGAGGGAAGTCATCGCAGCTGCCATGGAGCCAGCATTTGTCGGGGACCTGGCACGCAGGC
CACCGGCTCTGGGAGAGGGCTGAGGAGCCGTGGGGCTCACGTTTCAGGGATTAGCTTGTGTAAC
TTGACTTGTTCCCCCAAATTCTACAAGTACAGAGAATATGCAGAAATCTGTGAGAGAAACAACC
TTCTGCAGCTCGTTGTTGTGGGGATTATATTAGTAAGATGCCTAGAAAATACGATTCAGAAGGA
ATGTGGGTGCGTGTGACTTGGTGGTGGGTGGGCTCCACTCACCACCCTCCCTCCGCACCTGTCC
GAGGCATTTGAACCAGAGCAACTCCATTTCGAATAGGGGCCGGTAAAATAAGGCTAAGACCTAC
TGGGCTGCATTCCCAGATGGTTAAGGCATTCTAAGTCACAGGATGAGATACGAGGTCGGCACAA
GATACAGGTCATAAAGACCTTGCTGATGAAACAGGCTGCAGTAAATAAGCTGGCTAAAACCCAA
AATGGCAACAAGATGTGTCCTCTGGTGGTCCTCACTGCTACACTCCCACCAGCACCATGACAGT
TTACAAATGCCATGGCAACATCAGGAAGTTACCCTATATGGTCTGAAAAGAGGAAGCATGAATA
ATCCACCTCCTGTTTAGCATATCATCAAGAAATAACCATAAAAATGGGCAACCCACAGCCCTTG
GGGCTGCTCTGTCTATGGAGTAGCCGTTCTTTTACCCCTTTACTTTCCTAATAAACTTACTTTC
ACTTTA

hide sequence

Promoters

RGD ID:

15096869

Promoter ID:

EPDNEWNC_H1699

Type:

initiation region

Name:

LINC02352_1

Description:

long intergenic non-protein coding RNA 2352 [Source:HGNCSymbol;Acc:HGNC:53274]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	15	31,215,980 - 31,216,040	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	LINC02352	COSMIC
Ensembl Genes	ENSG00000259448	Ensembl
GTEx	ENSG00000259448	GTEx
HGNC ID	HGNC:53274	ENTREZGENE
Human Proteome Map	LINC02352	Human Proteome Map
NCBI Gene	LINC02352	ENTREZGENE
RNAcentral	URS0000A77336	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Human Phenotype Annotations - ClinVar

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Imported Disease Annotations - ClinVar

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