Gm46565 (predicted gene, 46565) - Rat Genome Database

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Gene: Gm46565 (predicted gene, 46565) Mus musculus
Analyze
Symbol: Gm46565
Name: predicted gene, 46565
RGD ID: 12797230
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391630,732,139 - 30,771,596 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1630,732,008 - 30,754,447 (-)EnsemblGRCm39 Ensembl
GRCm381630,913,321 - 30,952,778 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1630,913,331 - 30,935,629 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16B2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm46565
1390 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
15092062Egrme4_mearly growth rate, maternal effect 4 (mouse)162521866444220250Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000232280
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1630,732,149 - 30,752,158 (-)Ensembl
GRCm38.p6 Ensembl1630,913,331 - 30,933,340 (-)Ensembl
RefSeq Acc Id: ENSMUST00000232539
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1630,732,149 - 30,754,447 (-)Ensembl
GRCm38.p6 Ensembl1630,913,331 - 30,935,629 (-)Ensembl
RefSeq Acc Id: ENSMUST00000242093
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1630,732,012 - 30,752,359 (-)Ensembl
RefSeq Acc Id: ENSMUST00000243830
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1630,732,008 - 30,752,346 (-)Ensembl
RefSeq Acc Id: ENSMUST00000244015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1630,732,008 - 30,752,374 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245318
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1630,732,012 - 30,752,301 (-)Ensembl
RefSeq Acc Id: ENSMUST00000245342
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1630,732,012 - 30,752,322 (-)Ensembl
RefSeq Acc Id: XR_001781992
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391630,732,139 - 30,752,873 (-)NCBI
GRCm381630,913,321 - 30,934,058 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001781993
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391630,732,139 - 30,755,123 (-)NCBI
GRCm381630,913,321 - 30,936,305 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001781994
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391630,732,139 - 30,756,237 (-)NCBI
GRCm381630,913,321 - 30,937,419 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001781995
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391630,732,139 - 30,752,876 (-)NCBI
GRCm381630,913,321 - 30,934,061 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001781996
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391630,732,139 - 30,771,596 (-)NCBI
GRCm381630,913,321 - 30,952,778 (-)NCBI
Sequence:
Promoters
RGD ID:15094687
Promoter ID:EPDNEWNC_M2587
Type:single initiation site
Name:Gm46565_1
Description:predicted gene, 46565 [Source:MGI Symbol;Acc:MGI:5826202]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381630,933,314 - 30,933,374EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000116581 Ensembl
MGD MGI:5826202 ENTREZGENE
NCBI Gene Gm46565 ENTREZGENE
PhenoGen Gm46565 PhenoGen