Gm46560 (predicted gene, 46560) - Rat Genome Database

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Gene: Gm46560 (predicted gene, 46560) Mus musculus
Analyze
Symbol: Gm46560
Name: predicted gene, 46560
RGD ID: 12795333
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391631,327,149 - 31,332,769 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1631,325,478 - 31,332,832 (+)EnsemblGRCm39 Ensembl
GRCm381631,508,330 - 31,513,951 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1631,508,387 - 31,511,777 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map16B2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in Gm46560
196 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11059560Lmr12b_mleishmaniasis resistance 12b (mouse)162879281362792952Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
4141179Ipng3_mimprinted postnatal growth 3 (mouse)Not determined2277525257594076Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
11049571Lmr12c_mleishmaniasis resistance 12c (mouse)162879281362792952Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
11059559Lmr12a_mleishmaniasis resistance 12a (mouse)162879281362792952Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1300915Lmr12_mleishmaniasis resistance 12 (mouse)Not determined162879281362792952Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
4142236Pstc4_mperiosteal circumference 4 (mouse)Not determined161552290949523112Mouse
1300534Bmd15_mbone mineral density 15 (mouse)Not determined162193838355938574Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
25394537Skmw83_mskeletal muscle weight 83, soleus (mouse)163130446533189707Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
10045614Rapop6_mradiation-induced apoptosis 6 (mouse)Not determined161480292148803032Mouse
15092062Egrme4_mearly growth rate, maternal effect 4 (mouse)162521866444220250Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000231805
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,327,205 - 31,330,595 (+)Ensembl
GRCm38.p6 Ensembl1631,508,387 - 31,511,777 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,325,478 - 31,332,832 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255440
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,326,044 - 31,332,762 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255441
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,327,110 - 31,332,744 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255442
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,327,172 - 31,332,744 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255443
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,327,186 - 31,332,758 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255444
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,325,480 - 31,330,986 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,327,935 - 31,332,744 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255446
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,328,047 - 31,332,767 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255447
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,328,085 - 31,332,769 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,328,086 - 31,332,758 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255449
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,328,989 - 31,332,769 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,329,132 - 31,332,744 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255451
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,329,133 - 31,332,744 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255452
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,329,133 - 31,332,744 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,329,136 - 31,332,744 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255454
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,329,133 - 31,332,740 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255455
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,329,160 - 31,332,758 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255456
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,329,185 - 31,332,745 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255457
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,329,419 - 31,332,769 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255458
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,327,965 - 31,331,035 (+)Ensembl
Ensembl Acc Id: ENSMUST00000255459
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1631,328,004 - 31,330,986 (+)Ensembl
RefSeq Acc Id: XR_001781978
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391631,328,897 - 31,330,986 (+)NCBI
GRCm381631,510,082 - 31,512,168 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001781979
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391631,327,149 - 31,330,986 (+)NCBI
GRCm381631,508,330 - 31,512,168 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001781980
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391631,328,142 - 31,330,986 (+)NCBI
GRCm381631,509,324 - 31,512,168 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001781981
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391631,328,895 - 31,332,769 (+)NCBI
GRCm381631,510,081 - 31,513,951 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000116762 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000255458 ENTREZGENE
MGD MGI:5826197 ENTREZGENE
NCBI Gene Gm46560 ENTREZGENE
PhenoGen Gm46560 PhenoGen