opn4.1 (opsin 4.1) - Rat Genome Database

Name: opn4.1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: opn4.1 (opsin 4.1) Danio rerio

No known orthologs.

Symbol:

opn4.1

Name:

opsin 4.1

RGD ID:

12763890

Description:

Type:

protein-coding

RefSeq Status:

Previously known as:

mammalian-like melanopsin-2; melanopsin opn4m2; melanopsin-like; opn4; opn4c; opn4l; opn4m2; opsin 4 (melanopsin); opsin 4, like

RGD Orthologs

Alliance Genes

More Info

homologs ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Alliance orthologs ³				less info ...
Rattus norvegicus (Norway rat):	Opn4 (opsin 4)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Opn4 (opsin 4 (melanopsin))	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Homo sapiens (human):	OPN4 (opsin 4)	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Rh3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rh4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rh5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Rh7	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCz10 - Zebrafish GRCz10 Assembly

Position:

No map positions available.

References

Additional References at PubMed

PMID:12477932	PMID:16856781	PMID:20886157	PMID:21447259	PMID:21833582	PMID:21873635	PMID:21909239	PMID:21966429	PMID:23284166	PMID:23447595	PMID:23700457	PMID:24678795
PMID:26450929	PMID:26469318	PMID:27189481	PMID:28589149

Genomics

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_178289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY078161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC116614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX323807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFIL01029130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GQ925716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KT008429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Protein Sequences

Additional Information

External Database Links

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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