SNORA79B (small nucleolar RNA, H/ACA box 79B) - Rat Genome Database

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Gene: SNORA79B (small nucleolar RNA, H/ACA box 79B) Homo sapiens
Analyze
Symbol: SNORA79B
Name: small nucleolar RNA, H/ACA box 79B
RGD ID: 12738277
HGNC Page HGNC:52222
Description: Predicted to be involved in RNA processing. Predicted to be located in nucleolus.
Type: snorna
RefSeq Status: PROVISIONAL
RGD Orthologs
Dog
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,323,179 - 20,323,326 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,323,179 - 20,323,326 (-)EnsemblGRCh38hg38GRCh38
GRCh371420,791,338 - 20,791,485 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map14q11.2NCBI
T2T-CHM13v2.01414,520,071 - 14,520,218 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IEA)

References
Additional References at PubMed
PMID:21789175   PMID:27174936  


Genomics

Comparative Map Data
SNORA79B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381420,323,179 - 20,323,326 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1420,323,179 - 20,323,326 (-)EnsemblGRCh38hg38GRCh38
GRCh371420,791,338 - 20,791,485 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map14q11.2NCBI
T2T-CHM13v2.01414,520,071 - 14,520,218 (-)NCBIT2T-CHM13v2.0
LOC119869434
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1518,171,392 - 18,171,540 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01517,945,086 - 17,945,234 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11517,628,265 - 17,628,413 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01517,682,724 - 17,682,872 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01517,811,758 - 17,811,906 (-)NCBIUU_Cfam_GSD_1.0


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 14q11.2-32.33(chr14:20151149-106855263)x3 copy number gain See cases [RCV000135543] Chr14:20151149..106855263 [GRCh38]
Chr14:20619308..107263478 [GRCh37]
Chr14:19689148..106334523 [NCBI36]
Chr14:14q11.2-32.33		 pathogenic
GRCh38/hg38 14q11.2(chr14:20127290-21376436)x3 copy number gain See cases [RCV000053804] Chr14:20127290..21376436 [GRCh38]
Chr14:20595449..21844595 [GRCh37]
Chr14:19665289..20914435 [NCBI36]
Chr14:14q11.2		 pathogenic
GRCh38/hg38 14q11.2-21.1(chr14:20000611-38984415)x3 copy number gain See cases [RCV000053803] Chr14:20000611..38984415 [GRCh38]
Chr14:20468770..39453619 [GRCh37]
Chr14:19538610..38523370 [NCBI36]
Chr14:14q11.2-21.1		 pathogenic
GRCh38/hg38 14q11.2(chr14:19755249-22741281)x1 copy number loss See cases [RCV000051483] Chr14:19755249..22741281 [GRCh38]
Chr14:20223408..23210490 [GRCh37]
Chr14:19293248..22280330 [NCBI36]
Chr14:14q11.2		 pathogenic
GRCh38/hg38 14q11.2(chr14:20289246-20418076)x3 copy number gain See cases [RCV000136784] Chr14:20289246..20418076 [GRCh38]
Chr14:20757405..20886235 [GRCh37]
Chr14:19827245..19956075 [NCBI36]
Chr14:14q11.2		 benign
GRCh38/hg38 14q11.2-32.33(chr14:20043514-106877229)x3 copy number gain See cases [RCV000143373] Chr14:20043514..106877229 [GRCh38]
Chr14:20511673..107285437 [GRCh37]
Chr14:19581513..106356482 [NCBI36]
Chr14:14q11.2-32.33		 pathogenic
GRCh38/hg38 14q11.2-21.3(chr14:20043513-48642042)x3 copy number gain See cases [RCV000143748] Chr14:20043513..48642042 [GRCh38]
Chr14:20511672..49111245 [GRCh37]
Chr14:19581512..48180995 [NCBI36]
Chr14:14q11.2-21.3		 pathogenic
GRCh38/hg38 14q11.2(chr14:20151149-23442195)x3 copy number gain See cases [RCV000050914] Chr14:20151149..23442195 [GRCh38]
Chr14:20619308..23911404 [GRCh37]
Chr14:19689148..22981244 [NCBI36]
Chr14:14q11.2		 pathogenic
GRCh38/hg38 14q11.2-21.2(chr14:20022693-44093672)x3 copy number gain See cases [RCV000143186] Chr14:20022693..44093672 [GRCh38]
Chr14:20490852..44562875 [GRCh37]
Chr14:19560692..43632625 [NCBI36]
Chr14:14q11.2-21.2		 pathogenic
GRCh38/hg38 14q11.2-21.2(chr14:20196945-45284802)x1 copy number loss See cases [RCV000051485] Chr14:20196945..45284802 [GRCh38]
Chr14:20665104..45754005 [GRCh37]
Chr14:19734944..44823755 [NCBI36]
Chr14:14q11.2-21.2		 pathogenic
NC_000014.9:g.20013858_20436718dup duplication 14q11.2 microduplication syndrome [RCV001837230] Chr14:20013858..20436718 [GRCh38]
Chr14:14q11.2		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:76
Interacting mature miRNAs:77
Transcripts:ENST00000410557
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 2 2 1
Medium 8 11 15 9 126 9 20 16 23 6 31 15 1 2
Low 1254 1306 886 336 739 247 2475 652 887 250 958 1188 103 1 698 1450 1 1
Below cutoff 688 655 395 142 265 98 897 681 844 85 235 227 46 310 578

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000410557
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1420,323,179 - 20,323,326 (-)Ensembl
RefSeq Acc Id: NR_145735
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381420,323,179 - 20,323,326 (-)NCBI
T2T-CHM13v2.01414,520,071 - 14,520,218 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC SNORA79B COSMIC
Ensembl Genes ENSG00000222489 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000410557 ENTREZGENE
GTEx ENSG00000222489 GTEx
HGNC ID HGNC:52222 ENTREZGENE
Human Proteome Map SNORA79B Human Proteome Map
NCBI Gene SNORA79B ENTREZGENE
RNAcentral URS0000704142 RNACentral