Col7a1 (collagen type VII alpha 1 chain) - Rat Genome Database

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Gene: Col7a1 (collagen type VII alpha 1 chain) Ictidomys tridecemlineatus
Analyze
Symbol: Col7a1
Name: collagen type VII alpha 1 chain
RGD ID: 12737904
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN endodermal cell differentiation (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH alopecia (ortholog); autosomal dominant dystrophic epidermolysis bullosa (ortholog); Blister (ortholog); FOUND IN basement membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-1(VII) chain
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560263,588,441 - 63,621,451 (-)NCBI
SpeTri2.0NW_004936529348,938 - 381,701 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Col7a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560263,588,441 - 63,621,451 (-)NCBI
SpeTri2.0NW_004936529348,938 - 381,701 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL7A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl348,564,073 - 48,595,329 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl348,564,073 - 48,595,267 (-)EnsemblGRCh38hg38GRCh38
GRCh38348,564,073 - 48,595,329 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37348,601,506 - 48,632,762 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36348,576,510 - 48,607,597 (-)NCBINCBI36hg18NCBI36
Build 34348,576,509 - 48,607,689NCBI
Celera348,557,241 - 48,588,335 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef348,659,828 - 48,690,843 (-)NCBIHuRef
CHM1_1348,553,813 - 48,584,903 (-)NCBICHM1_1
Col7a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,782,654 - 108,813,943 (+)NCBIGRCm39mm39
GRCm39 Ensembl9108,782,654 - 108,813,943 (+)Ensembl
GRCm389108,953,586 - 108,984,875 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,953,586 - 108,984,875 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,855,790 - 108,886,920 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,810,682 - 108,841,812 (+)NCBImm8
Celera9108,511,705 - 108,542,813 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.63NCBI
Col7a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28109,604,877 - 109,637,252 (+)NCBI
Rnor_6.0 Ensembl8117,694,605 - 117,726,844 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08117,694,441 - 117,726,844 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08117,046,218 - 117,078,589 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,971,207 - 114,003,445 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18113,990,661 - 114,022,897 (+)NCBI
Celera8108,898,754 - 108,930,986 (+)NCBICelera
Cytogenetic Map8q32NCBI
Col7a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955532650,913 - 681,186 (-)NCBIChiLan1.0ChiLan1.0
COL7A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1349,567,831 - 49,599,027 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl349,568,163 - 49,598,919 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0348,485,922 - 48,518,036 (-)NCBIMhudiblu_PPA_v0panPan3
COL7A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12040,519,121 - 40,550,305 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2040,519,378 - 40,552,935 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2040,436,737 - 40,467,232 (+)NCBI
ROS_Cfam_1.02041,004,719 - 41,035,678 (+)NCBI
UMICH_Zoey_3.12040,242,306 - 40,272,806 (+)NCBI
UNSW_CanFamBas_1.02040,647,074 - 40,677,568 (+)NCBI
UU_Cfam_GSD_1.02040,928,007 - 40,958,502 (+)NCBI
COL7A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11331,262,750 - 31,295,112 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,507,211 - 34,539,557 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COL7A1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1229,964,652 - 9,996,785 (-)NCBI
ChlSab1.1 Ensembl229,964,651 - 9,996,626 (-)Ensembl
Col7a1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247302,569,510 - 2,599,959 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021727426   ⟹   XP_021583101
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560263,588,441 - 63,621,450 (-)NCBI
SpeTri2.0NW_004936529348,938 - 381,701 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005726605
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560263,592,723 - 63,621,451 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021583101 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_021583101   ⟸   XM_021727426
- Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010204 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000017581 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026708 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
  4.10.410.10 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Kunitz_BPTI UniProtKB/TrEMBL
  Kunitz_BPTI_sf UniProtKB/TrEMBL
  Prtase_inh_Kunz-CS UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene Col7a1 ENTREZGENE
Pfam Collagen UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  Kunitz_BPTI UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
PRINTS BASICPTASE UniProtKB/TrEMBL
PROSITE BPTI_KUNITZ_1 UniProtKB/TrEMBL
  BPTI_KUNITZ_2 UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  VWFA UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
  SSF57362 UniProtKB/TrEMBL
UniProt I3MZN5_ICTTR UniProtKB/TrEMBL