Txlnb (taxilin beta) - Rat Genome Database

Name: Txlnb
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Txlnb (taxilin beta) Ictidomys tridecemlineatus

Analyze

Symbol:

Txlnb

Name:

taxilin beta

RGD ID:

12737347

Description:

ENCODES a protein that exhibits syntaxin binding (inferred); ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); FOUND IN cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

beta-taxilin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TXLNB (taxilin beta)	NCBI	Ortholog
Mus musculus (house mouse):	Txlnb (taxilin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Txlnb (taxilin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Txlnb (taxilin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TXLNB (taxilin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TXLNB (taxilin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TXLNB (taxilin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TXLNB (taxilin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Txlnb (taxilin beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	126,472,022 - 126,513,407 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936560	6,251,213 - 6,292,598 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936560	6,253,195 - 6,292,556 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Familial Behcet-Like Autoinflammatory Syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IEA)

Molecular Function

protein binding (ISO)

syntaxin binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Txlnb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	126,472,022 - 126,513,407 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936560	6,251,213 - 6,292,598 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936560	6,253,195 - 6,292,556 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TXLNB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	139,159,162 - 139,323,950 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	139,239,083 - 139,291,998 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	139,561,198 - 139,613,135 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	139,602,891 - 139,654,849 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	139,602,893 - 139,654,849	NCBI
Celera	6	140,301,267 - 140,353,271 (-)	NCBI		Celera
Cytogenetic Map	6	q24.1	NCBI
HuRef	6	137,122,735 - 137,174,737 (-)	NCBI		HuRef
CHM1_1	6	139,824,342 - 139,876,297 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	140,347,705 - 140,507,844 (-)	NCBI		T2T-CHM13v2.0

Txlnb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	17,671,967 - 17,721,411 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	17,671,974 - 17,721,413 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	17,796,219 - 17,845,663 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	17,796,226 - 17,845,665 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	17,516,025 - 17,565,469 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	17,485,696 - 17,535,079 (+)	NCBI		MGSCv36	mm8
Celera	10	17,679,390 - 17,728,131 (+)	NCBI		Celera
Cytogenetic Map	10	A2	NCBI
cM Map	10	7.24	NCBI

Txlnb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	14,224,647 - 14,269,837 (+)	NCBI		GRCr8
mRatBN7.2	1	12,404,845 - 12,449,977 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	12,404,859 - 12,449,975 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	12,167,527 - 12,213,188 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	18,169,452 - 18,215,113 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	12,385,196 - 12,430,312 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	12,915,781 - 12,961,680 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	12,915,734 - 12,961,670 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	14,609,469 - 14,655,264 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	12,814,809 - 12,857,077 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	12,753,057 - 12,856,515 (+)	NCBI
Celera	1	10,862,671 - 10,907,830 (+)	NCBI		Celera
Cytogenetic Map	1	p12	NCBI

Txlnb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	20,445,205 - 20,482,523 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955436	20,442,605 - 20,481,758 (+)	NCBI	ChiLan1.0	ChiLan1.0

TXLNB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	159,208,553 - 159,293,118 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	157,102,881 - 157,186,505 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	137,002,343 - 137,086,487 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	141,083,798 - 141,133,794 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	141,084,075 - 141,130,691 (-)	Ensembl	panpan1.1		panPan2

TXLNB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	31,417,182 - 31,464,674 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	31,417,538 - 31,464,624 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	32,288,265 - 32,338,086 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	31,575,856 - 31,625,741 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	31,575,904 - 31,625,667 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	31,451,654 - 31,501,470 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	31,334,143 - 31,384,048 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	31,645,609 - 31,695,514 (-)	NCBI		UU_Cfam_GSD_1.0

TXLNB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	25,228,615 - 25,285,301 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	25,228,602 - 25,285,303 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	28,367,688 - 28,425,410 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TXLNB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	34,099,200 - 34,151,823 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	34,099,435 - 34,151,823 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	6,241,641 - 6,291,264 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Txlnb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624753	14,712,569 - 14,761,243 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624753	14,712,618 - 14,759,830 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005329814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000021984 ⟹ ENSSTOP00000020648

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936560	6,251,213 - 6,292,598 (-)	Ensembl

RefSeq Acc Id:

XM_005329814 ⟹ XP_005329871

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404946	126,472,022 - 126,513,407 (-)	NCBI
SpeTri2.0	NW_004936560	6,253,195 - 6,292,556 (-)	NCBI

Sequence:

show sequence

CTCAGCCTTGTAAGAATGCCACCCGCCTGCCTGCTCCTGCTGTTGCTGCGGCTCTGACTTGCTT
TTTTGCTCCCTCTTTCCTCTCTCTTCTCTTCCTGCTTAGCTCCTTGCCTTCTGACACTACTTCC
AGTATGGAGACTAATCACTCTGAACAGCTCTCAACTGAAGAGTCAATTCTGCCAGGAGACAGTT
CATCATCACCTAATCAAAATGGCCTGGGGAAGCAAAATGGTCAGGATTCCTCAACCTCGCTCCA
AGAACCAGAGCAGGCAACAAGTGTGCACCCTGTAAAGGGAGCTCAGGATATCTCCGAAGAGTTG
AATCGACAACTGGAAGACATTATTAACTTGTATGGATCTGCTGCCAGTACAATAGGAAAAGAAG
GCTCTGCCAAAACACAGGAGCAGCCTGAAAATGCAGAGGCACCTGACAATGAGGATGGGGACTG
TGAGGAAACCAATGAAGAGGCCGAAAGAGAACCCCTTGCTTCTGAAGAACCATCCATAGTCAAA
GAACCTGTTGGCAATAAAGAGCAAAAATTGGAAAAGAAAATCCTAAAAGGATTAGGCAAAGAAG
CCAACTTGCTAATGCAAAATCTGAACAAGCTACAGACACCTGAAGAAAAGCTTGATTTTTTACT
CAAGAAGTATGCTGAATTGCTGGATGAACATCGCACAGAGCAAAAGAAGTTAAAGGTCCTACAA
AAGAAACAGATGCAAATCCAGAAAGAAAAGGACCAATTACAAAGCGAACACAGCAGAGCTATCC
TGGCTCGGAGCAAACTGGAGAGTCTGTGCCGAGAGCTGCAGAGACACAATAAGACACTGAAGGA
GGAAACCCTCCAGCGGGCACGTGAGGAAGAAGAGAAAAGGAAGGAGATCACAAGTCATTTTCAA
ACTACCCTGACAGATATCCAGGCACAGATAGAGCAGCAGAGTGAGCGAAATATGAAGCTCTGTC
AGGAGAACACAGAGCTTGCAGAAAAACTGAAAAGCATCATTGATCAGTATGAGCTCAGAGAGGA
GCACCTGGACAAAATATTTAAACACAGAGAACTGCAGCAGAAGCTGGTGGATGCAAAACTTGAG
CAGGCACAAGAAATGATGAAGGAAGCAGAGGAGCAACATAAACGAGAAAAGGAATATTTACTGA
ACCAGGCAGCAGAGTGGAAACTTCAGGCCAAAGTGCTGAAGGAACAAGAGACAGTGCTACAGGC
TCAGCTTACTCTCTACTCTGGAAGGTTTGAAGAGTTCCAGAGCACGCTTACAAAAAGCAATGAA
GTGTTCGCCACTTTTAAGCAGGAAATGGATAAAACAACCAAGAAAATGAAAAAGCTGGAAAAAG
ACACAGCCACGTGGAAAGCCCGATTTGAGAACTGTAACAAAGCCCTATTGGACATGATTGAAGA
GAAAGCACTGAGAGCTAAGGAATATGAGTGTTTCGTGATGAAAATCGGGAGGCTGGAGAATCTC
TGTCGCGCTTTACAAGAAGAGAGAAACGAACTCTATAAAAAAATCAGAGAAGCCAAAGTGTCTG
AACAGGAGGACCAAAGTCAGCATAGTTCCGACGAAGAGCCAGAGGCAAATGTCTCTGTGGATCG
AGAGAGAGATGCAGAGGAAGCCAACAGTGTTCAAAACGCTGTGGCAAACCTGGCTGCAGCCTTC
CAGGTAATTCACCACCCGGAGTCCAACCTCCAGCAGTCGGAGGCATTGCCTTCAGCACTGGGCG
GGCCTCGGGGCAGCGGTGGCTCCGCCCCTCTGGAGCTGGAAGCGCTCCCTCCGCTCCTTCTCGG
GGGTTCAACTGACCCGCGGCCTCCTCCAGTCCCTCAGGCTGAGGCCCAAGGTGGTGAGGAGGCA
AAGCCTGCCCCTGAGGTCAGTAATCCCTTGACCCAGGCGGGAGCAGAACCCCGAGCTCAGAGTC
TCCCCGAGGAGCCTCAGGCTGCTGAGCTGCCCCGGAAATCAGGGGTCGGAGCTTCCGGTCAGGC
CTCACAGGCCGTATCCGAGGCCTCCCCGCGCAGGGTGGAAGCAGAGGGTTCCGCTCCACCACCT
CCAGCCAAGGTGCAAGCTCCAGCAGGGCCGCCTGGGTGTGAGCCCAGCGAGCAGCCCCTGCCTG
CAGCCTCAGAGGAGCTGGGCCCCGGGGCCCCGGCCCGACTCCAGCTGCCCACGGTGGCCGACAC
CAACCTGGAACCAGTAAACTGAGCCTCATCGGCCCTCGGAAGCCGTTCTTTCCGACCTTACATC
TTCACCATATCCCACTGTCTCTGAAAAACATACCATTAGTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005329871	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000020648.2
GenBank Protein	KAG3290362	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005329871 ⟸ XM_005329814

- UniProtKB:

I3N8F2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

METNHSEQLSTEESILPGDSSSSPNQNGLGKQNGQDSSTSLQEPEQATSVHPVKGAQDISEELN
RQLEDIINLYGSAASTIGKEGSAKTQEQPENAEAPDNEDGDCEETNEEAEREPLASEEPSIVKE
PVGNKEQKLEKKILKGLGKEANLLMQNLNKLQTPEEKLDFLLKKYAELLDEHRTEQKKLKVLQK
KQMQIQKEKDQLQSEHSRAILARSKLESLCRELQRHNKTLKEETLQRAREEEEKRKEITSHFQT
TLTDIQAQIEQQSERNMKLCQENTELAEKLKSIIDQYELREEHLDKIFKHRELQQKLVDAKLEQ
AQEMMKEAEEQHKREKEYLLNQAAEWKLQAKVLKEQETVLQAQLTLYSGRFEEFQSTLTKSNEV
FATFKQEMDKTTKKMKKLEKDTATWKARFENCNKALLDMIEEKALRAKEYECFVMKIGRLENLC
RALQEERNELYKKIREAKVSEQEDQSQHSSDEEPEANVSVDRERDAEEANSVQNAVANLAAAFQ
VIHHPESNLQQSEALPSALGGPRGSGGSAPLELEALPPLLLGGSTDPRPPPVPQAEAQGGEEAK
PAPEVSNPLTQAGAEPRAQSLPEEPQAAELPRKSGVGASGQASQAVSEASPRRVEAEGSAPPPP
AKVQAPAGPPGCEPSEQPLPAASEELGPGAPARLQLPTVADTNLEPVN

hide sequence

Ensembl Acc Id:

ENSSTOP00000020648 ⟸ ENSSTOT00000021984

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000014391	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000021984.2	UniProtKB/TrEMBL
InterPro	Taxilin_fam	UniProtKB/TrEMBL
NCBI Gene	Txlnb	ENTREZGENE
PANTHER	BETA-TAXILIN	UniProtKB/TrEMBL
	PTHR16127	UniProtKB/TrEMBL
Pfam	Taxilin	UniProtKB/TrEMBL
UniProt	I3N8F2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar