Prickle1 (prickle planar cell polarity protein 1) - Rat Genome Database

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Gene: Prickle1 (prickle planar cell polarity protein 1) Ictidomys tridecemlineatus
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Symbol: Prickle1
Name: prickle planar cell polarity protein 1
RGD ID: 12735926
Description: ENCODES a protein that exhibits transcription factor binding (ortholog); INVOLVED IN aorta development (ortholog); coronary vasculature development (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN Wnt signaling, the planar cell polarity pathway; ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); epilepsy (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN cytosol (ortholog); nuclear membrane (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: prickle planar cell polarity protein 1, transcript variant X1; prickle planar cell polarity protein 1, transcript variant X2; prickle-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494571,894,685 - 71,999,671 (+)NCBI
SpeTri2.0NW_0049365121,165,159 - 1,270,138 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nuclear membrane  (ISO)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Prickle1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494571,894,685 - 71,999,671 (+)NCBI
SpeTri2.0NW_0049365121,165,159 - 1,270,138 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRICKLE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1242,456,757 - 42,590,355 (-)EnsemblGRCh38hg38GRCh38
GRCh381242,456,757 - 42,589,755 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371242,850,559 - 42,983,548 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361241,139,341 - 41,269,745 (-)NCBINCBI36hg18NCBI36
Build 341241,139,340 - 41,269,745NCBI
Celera1241,653,996 - 41,785,497 (-)NCBI
Cytogenetic Map12q12NCBI
HuRef1239,878,936 - 40,010,599 (-)NCBIHuRef
CHM1_11242,818,791 - 42,950,331 (-)NCBICHM1_1
Prickle1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391593,396,992 - 93,494,147 (-)NCBIGRCm39mm39
GRCm39 Ensembl1593,396,995 - 93,493,772 (-)Ensembl
GRCm381593,499,111 - 93,596,266 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1593,499,114 - 93,595,891 (-)EnsemblGRCm38mm10GRCm38
MGSCv371593,329,545 - 93,426,322 (-)NCBIGRCm37mm9NCBIm37
MGSCv361593,327,294 - 93,424,071 (-)NCBImm8
Celera1595,647,051 - 95,744,081 (-)NCBICelera
Cytogenetic Map15E3NCBI
Prickle1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27124,639,142 - 124,735,027 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl7134,702,964 - 134,722,215 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07134,702,964 - 134,799,437 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07134,370,195 - 134,466,674 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47131,967,220 - 131,986,187 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17132,044,813 - 132,052,370 (-)NCBI
Celera7121,036,572 - 121,055,537 (-)NCBICelera
Cytogenetic Map7q35NCBI
Prickle1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555001,897,912 - 1,990,875 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555001,897,899 - 1,990,791 (-)NCBIChiLan1.0ChiLan1.0
PRICKLE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11247,100,352 - 47,126,116 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1247,100,393 - 47,126,102 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01246,127,673 - 46,262,333 (+)NCBIMhudiblu_PPA_v0panPan3
PRICKLE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12711,327,086 - 11,437,799 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2711,426,647 - 11,437,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2734,864,577 - 34,975,269 (-)NCBI
ROS_Cfam_1.02711,522,959 - 11,634,418 (+)NCBI
UMICH_Zoey_3.12711,336,611 - 11,448,200 (+)NCBI
UNSW_CanFamBas_1.02711,366,003 - 11,477,284 (+)NCBI
UU_Cfam_GSD_1.02735,111,079 - 35,222,648 (-)NCBI
PRICKLE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl573,707,022 - 73,826,431 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1573,707,026 - 73,826,529 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2576,446,397 - 76,452,034 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRICKLE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11138,696,771 - 38,819,324 (-)NCBI
ChlSab1.1 Ensembl1138,694,602 - 38,718,519 (-)Ensembl
Vero_WHO_p1.0NW_023666037207,742,821 - 207,865,507 (+)NCBI
Prickle1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462481610,087,866 - 10,185,004 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005324846   ⟹   XP_005324903
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494571,977,131 - 71,999,671 (+)NCBI
SpeTri2.0NW_0049365121,165,159 - 1,187,681 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726105   ⟹   XP_021581780
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494571,894,685 - 71,999,671 (+)NCBI
SpeTri2.0NW_0049365121,165,159 - 1,270,138 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040280785   ⟹   XP_040136719
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494571,976,716 - 71,999,671 (+)NCBI
RefSeq Acc Id: XM_040280786   ⟹   XP_040136720
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494571,976,986 - 71,999,671 (+)NCBI
RefSeq Acc Id: XM_040280787   ⟹   XP_040136721
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494571,977,495 - 71,999,671 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005324903   ⟸   XM_005324846
- UniProtKB: I3MH83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021581780   ⟸   XM_021726105
- Sequence:
RefSeq Acc Id: XP_040136719   ⟸   XM_040280785
RefSeq Acc Id: XP_040136720   ⟸   XM_040280786
RefSeq Acc Id: XP_040136721   ⟸   XM_040280787
Protein Domains
LIM zinc-binding   PET


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011379 ENTREZGENE
Ensembl Protein ENSSTOP00000010213 ENTREZGENE
  ENSSTOP00000026945 ENTREZGENE
NCBI Gene Prickle1 ENTREZGENE
UniProt I3MH83 ENTREZGENE