Prr3 (proline rich 3) - Rat Genome Database

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Gene: Prr3 (proline rich 3) Ictidomys tridecemlineatus
Analyze
Symbol: Prr3
Name: proline rich 3
RGD ID: 12735219
Description: ENCODES a protein that exhibits metal ion binding (inferred); RNA binding (inferred); ASSOCIATED WITH genetic disease (ortholog); megacolon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proline-rich protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494633,873,983 - 33,879,687 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837238,925 - 244,964 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936837238,981 - 244,946 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Prr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494633,873,983 - 33,879,687 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837238,925 - 244,964 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936837238,981 - 244,946 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,556,709 - 30,563,723 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,557,280 - 30,563,723 (+)EnsemblGRCh38hg38GRCh38
GRCh37630,524,486 - 30,531,500 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,632,735 - 30,640,159 (+)NCBINCBI36Build 36hg18NCBI36
Build 34630,632,641 - 30,639,477NCBI
Celera632,122,604 - 32,130,591 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,324,552 - 30,332,539 (+)NCBIHuRef
CHM1_1630,526,595 - 30,534,582 (+)NCBICHM1_1
T2T-CHM13v2.0630,420,885 - 30,427,899 (+)NCBIT2T-CHM13v2.0
Prr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,283,431 - 36,291,136 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1736,283,433 - 36,291,128 (-)EnsemblGRCm39 Ensembl
GRCm381735,972,539 - 35,980,244 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,972,541 - 35,980,236 (-)EnsemblGRCm38mm10GRCm38
MGSCv371736,109,484 - 36,116,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,580,594 - 35,588,289 (-)NCBIMGSCv36mm8
Celera1739,486,120 - 39,493,425 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.81NCBI
Prr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8202,797,677 - 2,804,674 (+)NCBIGRCr8
mRatBN7.2202,792,868 - 2,799,865 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl202,792,860 - 2,799,865 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx202,844,351 - 2,851,323 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0202,849,320 - 2,856,292 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0202,875,855 - 2,882,829 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,300,247 - 3,307,262 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,299,730 - 3,307,673 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,398,366 - 5,404,790 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4202,941,531 - 2,946,286 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1202,941,390 - 2,946,511 (+)NCBI
Celera20218,866 - 225,713 (+)NCBICelera
Cytogenetic Map20p12NCBI
Prr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583580,018 - 584,418 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955583580,630 - 584,418 (+)NCBIChiLan1.0ChiLan1.0
PRR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,115,719 - 45,122,127 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,078,778 - 41,085,173 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,299,519 - 30,306,524 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,170,056 - 31,177,068 (+)NCBIpanpan1.1PanPan1.1panPan2
PRR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112384,120 - 389,811 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12521,373 - 527,463 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012527,640 - 533,728 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12527,761 - 533,700 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112384,371 - 390,473 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012453,710 - 459,807 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012523,482 - 529,588 (+)NCBIUU_Cfam_GSD_1.0
PRR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,112,534 - 23,120,096 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,112,529 - 23,120,105 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2726,782,009 - 26,789,695 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PRR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,892,924 - 41,900,021 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,891,721 - 41,899,371 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604430,221,412 - 30,228,510 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,127,050 - 25,133,344 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475425,121,391 - 25,133,369 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005341023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000011828   ⟹   ENSSTOP00000010609
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936837238,925 - 244,964 (+)Ensembl
RefSeq Acc Id: XM_005341023   ⟹   XP_005341080
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494633,873,983 - 33,879,687 (+)NCBI
SpeTri2.0NW_004936837238,981 - 244,946 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005341080 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010609.2
GenBank Protein KAG3288988 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005341080   ⟸   XM_005341023
- UniProtKB: I3MI23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000010609   ⟸   ENSSTOT00000011828
Protein Domains
C3H1-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011829 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011828.3 UniProtKB/TrEMBL
Gene3D-CATH Zinc finger, CCCH-type UniProtKB/TrEMBL
InterPro PRR3 UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/TrEMBL
NCBI Gene Prr3 ENTREZGENE
PANTHER PROLINE-RICH PROTEIN 3-RELATED UniProtKB/TrEMBL
  PTHR47398 UniProtKB/TrEMBL
Pfam zf-CCCH UniProtKB/TrEMBL
PROSITE ZF_C3H1 UniProtKB/TrEMBL
SMART ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP SSF90229 UniProtKB/TrEMBL
UniProt I3MI23 ENTREZGENE, UniProtKB/TrEMBL