Cacng3 (calcium voltage-gated channel auxiliary subunit gamma 3) - Rat Genome Database

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Gene: Cacng3 (calcium voltage-gated channel auxiliary subunit gamma 3) Ictidomys tridecemlineatus
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Symbol: Cacng3
Name: calcium voltage-gated channel auxiliary subunit gamma 3
RGD ID: 12734973
Description: ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN positive regulation of AMPA receptor activity (ortholog); regulation of AMPA receptor activity (ortholog); ASSOCIATED WITH childhood absence epilepsy (ortholog); macular degeneration (ortholog); FOUND IN dendrite (ortholog); excitatory synapse (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent calcium channel gamma-3 subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344120,664,522 - 120,743,045 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365018,762,376 - 8,840,915 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365018,762,386 - 8,840,123 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cacng3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344120,664,522 - 120,743,045 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365018,762,376 - 8,840,915 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365018,762,386 - 8,840,123 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381624,256,335 - 24,362,412 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1624,256,335 - 24,362,412 (+)EnsemblGRCh38hg38GRCh38
GRCh371624,267,656 - 24,373,733 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361624,174,377 - 24,281,238 (+)NCBINCBI36Build 36hg18NCBI36
Build 341624,174,376 - 24,281,238NCBI
Celera1623,044,814 - 23,151,626 (+)NCBICelera
Cytogenetic Map16p12.1NCBI
HuRef1622,357,514 - 22,464,192 (+)NCBIHuRef
CHM1_11625,279,898 - 25,387,338 (+)NCBICHM1_1
T2T-CHM13v2.01624,532,831 - 24,639,260 (+)NCBIT2T-CHM13v2.0
Cacng3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397122,270,967 - 122,368,616 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7122,269,715 - 122,368,616 (+)EnsemblGRCm39 Ensembl
GRCm387122,671,744 - 122,769,393 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7122,670,492 - 122,769,393 (+)EnsemblGRCm38mm10GRCm38
MGSCv377129,815,258 - 129,912,907 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367122,462,922 - 122,559,994 (+)NCBIMGSCv36mm8
Celera7122,557,841 - 122,658,275 (+)NCBICelera
Cytogenetic Map7F2NCBI
cM Map766.81NCBI
Cacng3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81186,632,334 - 186,728,220 (+)NCBIGRCr8
mRatBN7.21177,201,361 - 177,297,019 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1177,201,288 - 177,297,024 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1185,530,079 - 185,624,581 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01192,716,035 - 192,810,537 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01185,400,681 - 185,495,253 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01192,613,766 - 192,708,371 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1192,613,372 - 192,709,078 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01199,676,988 - 199,771,889 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41181,498,716 - 181,594,090 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11181,638,630 - 181,734,005 (+)NCBI
Celera1174,909,742 - 175,002,485 (+)NCBICelera
Cytogenetic Map1q36NCBI
Cacng3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554932,742,096 - 2,841,403 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554932,742,096 - 2,841,353 (+)NCBIChiLan1.0ChiLan1.0
CACNG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21825,668,414 - 25,775,243 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11630,188,707 - 30,295,523 (+)NCBINHGRI_mPanPan1
PanPan1.11624,501,881 - 24,608,921 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1624,501,881 - 24,608,921 (+)Ensemblpanpan1.1panPan2
CACNG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1621,626,977 - 21,712,331 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl621,627,547 - 21,711,635 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha623,188,831 - 23,274,205 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0621,764,445 - 21,849,816 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl621,764,445 - 21,849,806 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1621,569,695 - 21,655,198 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0621,472,243 - 21,557,090 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0621,866,262 - 21,951,817 (-)NCBIUU_Cfam_GSD_1.0
CACNG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl321,855,855 - 21,961,187 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1321,855,847 - 21,961,191 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2322,759,942 - 22,865,619 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CACNG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1521,975,706 - 22,081,428 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl521,976,428 - 22,081,547 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660687,691,896 - 7,799,654 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacng3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247829,319,277 - 9,408,821 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247829,319,318 - 9,408,620 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021725454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000024685   ⟹   ENSSTOP00000015794
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365018,762,838 - 8,839,561 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000037789   ⟹   ENSSTOP00000032395
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365018,762,376 - 8,840,915 (+)Ensembl
RefSeq Acc Id: XM_021725454   ⟹   XP_021581129
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344120,664,522 - 120,743,045 (+)NCBI
SpeTri2.0NW_0049365018,762,386 - 8,840,123 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021581129 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015794.2
  ENSSTOP00000032395.1
GenBank Protein KAG3259506 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021581129   ⟸   XM_021725454
- UniProtKB: A0A287DFT7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000015794   ⟸   ENSSTOT00000024685
Ensembl Acc Id: ENSSTOP00000032395   ⟸   ENSSTOT00000037789


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028156 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024685.2 UniProtKB/TrEMBL
  ENSSTOT00000037789.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro CACNG_subunit UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
  VDCC_gsu UniProtKB/TrEMBL
NCBI Gene Cacng3 ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA-3 SUBUNIT UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS VDCCGAMMA UniProtKB/TrEMBL
UniProt A0A287DFT7 ENTREZGENE, UniProtKB/TrEMBL
  I3MUJ9_ICTTR UniProtKB/TrEMBL