Srd5a3 (steroid 5 alpha-reductase 3) - Rat Genome Database

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Gene: Srd5a3 (steroid 5 alpha-reductase 3) Ictidomys tridecemlineatus
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Symbol: Srd5a3
Name: steroid 5 alpha-reductase 3
RGD ID: 12734007
Description: ENCODES a protein that exhibits 3-oxo-5-alpha-steroid 4-dehydrogenase activity (inferred); 3-oxo-5alpha-steroid 4-dehydrogenase (NADP+) activity (inferred); oxidoreductase activity (inferred); INVOLVED IN dolichol biosynthetic process (inferred); dolichol metabolic process (inferred); dolichol-linked oligosaccharide biosynthetic process (inferred); ASSOCIATED WITH autistic disorder (ortholog); cone dystrophy (ortholog); congenital disorder of glycosylation (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: polyprenol reductase; steroid 5 alpha-reductase 3, transcript variant X1; steroid 5 alpha-reductase 3, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528528,553,298 - 28,570,808 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648217,727,310 - 17,745,225 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648217,727,418 - 17,744,780 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Srd5a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528528,553,298 - 28,570,808 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648217,727,310 - 17,745,225 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648217,727,418 - 17,744,780 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRD5A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38455,346,242 - 55,373,100 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl455,346,213 - 55,373,100 (+)EnsemblGRCh38hg38GRCh38
GRCh37456,212,409 - 56,239,267 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36455,907,166 - 55,932,235 (+)NCBINCBI36Build 36hg18NCBI36
Celera453,714,242 - 53,739,692 (+)NCBICelera
Cytogenetic Map4q12NCBI
HuRef452,161,384 - 52,188,230 (+)NCBIHuRef
CHM1_1456,247,542 - 56,274,429 (+)NCBICHM1_1
T2T-CHM13v2.0458,834,370 - 58,861,238 (+)NCBIT2T-CHM13v2.0
Srd5a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39576,285,296 - 76,303,350 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl576,288,118 - 76,303,351 (+)EnsemblGRCm39 Ensembl
GRCm38576,140,273 - 76,155,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl576,140,271 - 76,155,504 (+)EnsemblGRCm38mm10GRCm38
MGSCv37576,569,302 - 76,584,496 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36577,215,052 - 77,230,246 (+)NCBIMGSCv36mm8
Celera573,411,924 - 73,427,131 (+)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map540.5NCBI
Srd5a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81432,400,603 - 32,414,987 (-)NCBIGRCr8
mRatBN7.21432,046,408 - 32,060,796 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1432,046,408 - 32,060,747 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1432,412,742 - 32,427,151 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01433,720,639 - 33,735,052 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01432,205,755 - 32,220,164 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01434,554,769 - 34,570,423 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1434,556,220 - 34,570,356 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01434,387,218 - 34,402,885 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41434,318,370 - 34,333,413 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11434,318,370 - 34,333,413 (-)NCBI
Celera1431,347,467 - 31,361,593 (-)NCBICelera
Cytogenetic Map14p11NCBI
Srd5a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544715,578,661 - 15,588,218 (-)NCBIChiLan1.0ChiLan1.0
SRD5A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2374,421,840 - 74,445,979 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1474,625,843 - 74,649,981 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0468,565,400 - 68,591,400 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1475,131,196 - 75,155,347 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl475,131,196 - 75,155,347 (-)Ensemblpanpan1.1panPan2
SRD5A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11347,627,854 - 47,643,116 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1347,627,913 - 47,642,566 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1347,585,282 - 47,601,064 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01348,238,814 - 48,254,620 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1348,238,759 - 48,253,443 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11347,914,061 - 47,929,821 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01347,442,811 - 47,458,595 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01348,391,087 - 48,406,872 (+)NCBIUU_Cfam_GSD_1.0
LOC100525350
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1842,024,352 - 42,049,209 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2844,131,945 - 44,156,754 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SRD5A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1713,193,601 - 13,218,115 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl713,190,412 - 13,217,768 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606613,948,826 - 13,972,878 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srd5a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476114,089,900 - 14,104,408 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476114,087,772 - 14,104,348 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000016177   ⟹   ENSSTOP00000014482
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648217,727,310 - 17,745,225 (+)Ensembl
RefSeq Acc Id: XM_005320015   ⟹   XP_005320072
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528528,553,298 - 28,570,802 (-)NCBI
SpeTri2.0NW_00493648217,727,420 - 17,744,780 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722810   ⟹   XP_021578485
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528528,553,298 - 28,570,808 (-)NCBI
SpeTri2.0NW_00493648217,727,418 - 17,744,780 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005320072 (Get FASTA)   NCBI Sequence Viewer  
  XP_021578485 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014482.2
GenBank Protein KAG3276604 (Get FASTA)   NCBI Sequence Viewer  
  KAG3276605 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005320072   ⟸   XM_005320015
- Peptide Label: isoform X1
- UniProtKB: I3MR19 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021578485   ⟸   XM_021722810
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSTOP00000014482   ⟸   ENSSTOT00000016177

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016177 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016177.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1630 UniProtKB/TrEMBL
InterPro 3-oxo-5_a-steroid_4-DH_C UniProtKB/TrEMBL
  Dfg10/SRD5A3 UniProtKB/TrEMBL
NCBI Gene Srd5a3 ENTREZGENE
PANTHER POLYPRENOL REDUCTASE UniProtKB/TrEMBL
  PTHR14624 UniProtKB/TrEMBL
Pfam Steroid_dh UniProtKB/TrEMBL
PROSITE S5A_REDUCTASE UniProtKB/TrEMBL
UniProt I3MR19 ENTREZGENE, UniProtKB/TrEMBL