Rab11fip4 (RAB11 family interacting protein 4) - Rat Genome Database

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Gene: Rab11fip4 (RAB11 family interacting protein 4) Ictidomys tridecemlineatus
Analyze
Symbol: Rab11fip4
Name: RAB11 family interacting protein 4
RGD ID: 12733886
Description: ENCODES a protein that exhibits calcium ion binding (inferred); protein homodimerization activity (inferred); small GTPase binding (inferred); INVOLVED IN endocytic recycling (inferred); neural retina development (inferred); positive regulation of G1 to G0 transition (inferred); ASSOCIATED WITH cerebral palsy (ortholog); Developmental Disabilities (ortholog); neurofibromatosis 1 (ortholog); FOUND IN cleavage furrow (inferred); endocytic vesicle (inferred); endosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RAB11 family interacting protein 4, transcript variant X1; RAB11 family interacting protein 4, transcript variant X2; rab11 family-interacting protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560240,387,162 - 40,504,353 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365383,269,336 - 3,382,304 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365383,269,317 - 3,382,298 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Rab11fip4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560240,387,162 - 40,504,353 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365383,269,336 - 3,382,304 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365383,269,317 - 3,382,298 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11FIP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381731,391,675 - 31,538,211 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1731,391,675 - 31,538,211 (+)EnsemblGRCh38hg38GRCh38
GRCh371729,718,693 - 29,865,230 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361726,742,768 - 26,889,352 (+)NCBINCBI36Build 36hg18NCBI36
Build 341726,742,767 - 26,889,352NCBI
Celera1726,666,452 - 26,785,001 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1725,912,539 - 26,075,598 (+)NCBIHuRef
CHM1_11729,764,889 - 29,927,838 (+)NCBICHM1_1
T2T-CHM13v2.01732,337,033 - 32,483,971 (+)NCBIT2T-CHM13v2.0
Rab11fip4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391179,481,847 - 79,588,842 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1179,482,038 - 79,588,849 (+)EnsemblGRCm39 Ensembl
GRCm381179,591,021 - 79,698,016 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1179,591,212 - 79,698,023 (+)EnsemblGRCm38mm10GRCm38
MGSCv371179,404,714 - 79,507,514 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361179,407,407 - 79,510,207 (+)NCBIMGSCv36mm8
Celera1189,223,898 - 89,326,618 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.15NCBI
Rab11fip4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81065,048,070 - 65,156,086 (+)NCBIGRCr8
mRatBN7.21064,550,109 - 64,658,123 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1064,550,177 - 64,654,759 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1069,176,576 - 69,282,868 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01068,681,960 - 68,788,261 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01064,151,473 - 64,252,234 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01066,942,363 - 67,051,672 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1066,942,398 - 67,048,308 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01064,598,379 - 64,705,864 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41065,780,123 - 65,883,833 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11065,863,324 - 65,896,402 (+)NCBI
Celera1063,520,873 - 63,623,693 (+)NCBICelera
Cytogenetic Map10q25NCBI
Rab11fip4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554816,469,286 - 6,548,919 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554816,501,704 - 6,554,448 (+)NCBIChiLan1.0ChiLan1.0
RAB11FIP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21932,947,881 - 33,094,468 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11734,826,949 - 34,973,445 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01725,265,176 - 25,411,124 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11726,001,073 - 26,146,941 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1726,006,251 - 26,146,947 (-)Ensemblpanpan1.1panPan2
RAB11FIP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1941,336,537 - 41,416,230 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl941,341,877 - 41,416,176 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha940,498,477 - 40,616,083 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0942,157,076 - 42,274,857 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl942,157,087 - 42,274,857 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1940,940,966 - 41,058,478 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0941,236,011 - 41,353,380 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0941,311,847 - 41,429,386 (-)NCBIUU_Cfam_GSD_1.0
RAB11FIP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1243,364,140 - 43,474,241 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11243,360,758 - 43,474,235 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21245,195,241 - 45,303,103 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB11FIP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11624,851,474 - 24,991,482 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1624,851,595 - 24,991,361 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660755,082,170 - 5,224,352 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab11fip4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248753,972,765 - 4,098,853 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248753,972,765 - 4,103,150 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000010886   ⟹   ENSSTOP00000009765
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365383,269,336 - 3,382,304 (-)Ensembl
RefSeq Acc Id: XM_005327798   ⟹   XP_005327855
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560240,393,212 - 40,504,353 (-)NCBI
SpeTri2.0NW_0049365383,269,317 - 3,382,298 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013359784   ⟹   XP_013215238
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560240,393,212 - 40,427,716 (-)NCBI
SpeTri2.0NW_0049365383,269,317 - 3,305,672 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040269153   ⟹   XP_040125087
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560240,387,162 - 40,504,299 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005327855 (Get FASTA)   NCBI Sequence Viewer  
  XP_013215238 (Get FASTA)   NCBI Sequence Viewer  
  XP_040125087 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000009765.3
GenBank Protein KAG3269543 (Get FASTA)   NCBI Sequence Viewer  
  KAG3269544 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005327855   ⟸   XM_005327798
- Peptide Label: isoform X1
- UniProtKB: I3MGA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013215238   ⟸   XM_013359784
- Peptide Label: isoform X2
- UniProtKB: I3MGA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040125087   ⟸   XM_040269153
- Peptide Label: isoform X3
Ensembl Acc Id: ENSSTOP00000009765   ⟸   ENSSTOT00000010886
Protein Domains
EF-hand   FIP-RBD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010883 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010886.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.2440 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  FIP-RBD_C_sf UniProtKB/TrEMBL
  Rab-bd_FIP-RBD UniProtKB/TrEMBL
  Rab11-interacting_regulator UniProtKB/TrEMBL
NCBI Gene Rab11fip4 ENTREZGENE
PANTHER RAB11 FAMILY-INTERACTING PROTEIN 4 UniProtKB/TrEMBL
  RAB11-FAMILY INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam RBD-FIP UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
  FIP_RBD UniProtKB/TrEMBL
Superfamily-SCOP SSF144270 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt I3MGA4 ENTREZGENE, UniProtKB/TrEMBL