Slc2a12 (solute carrier family 2 member 12) - Rat Genome Database

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Gene: Slc2a12 (solute carrier family 2 member 12) Ictidomys tridecemlineatus
Analyze
Symbol: Slc2a12
Name: solute carrier family 2 member 12
RGD ID: 12733043
Description: ENCODES a protein that exhibits glucose transmembrane transporter activity (inferred); symporter activity (inferred); transmembrane transporter activity (inferred); INVOLVED IN glucose transmembrane transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endomembrane system (inferred); membrane (inferred); perinuclear region of cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 2, facilitated glucose transporter member 12
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946122,052,271 - 122,105,249 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365601,828,991 - 1,884,532 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365601,833,309 - 1,884,455 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Slc2a12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946122,052,271 - 122,105,249 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365601,828,991 - 1,884,532 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365601,833,309 - 1,884,455 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC2A12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386133,987,581 - 134,052,624 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6133,987,581 - 134,052,624 (-)EnsemblGRCh38hg38GRCh38
GRCh376134,308,719 - 134,373,762 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366134,350,412 - 134,415,482 (-)NCBINCBI36Build 36hg18NCBI36
Build 346134,353,323 - 134,415,444NCBI
Celera6135,049,799 - 135,114,783 (-)NCBICelera
Cytogenetic Map6q23.2NCBI
HuRef6131,877,652 - 131,942,705 (-)NCBIHuRef
CHM1_16134,570,960 - 134,635,958 (-)NCBICHM1_1
T2T-CHM13v2.06135,175,590 - 135,240,550 (-)NCBIT2T-CHM13v2.0
Slc2a12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391022,488,821 - 22,579,779 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1022,520,910 - 22,580,184 (+)EnsemblGRCm39 Ensembl
GRCm381022,644,990 - 22,703,880 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1022,645,011 - 22,704,285 (+)EnsemblGRCm38mm10GRCm38
MGSCv371022,364,817 - 22,423,686 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361022,334,547 - 22,393,701 (+)NCBIMGSCv36mm8
Celera1023,592,104 - 23,650,608 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map1010.21NCBI
Slc2a12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8124,623,558 - 24,683,577 (-)NCBIGRCr8
mRatBN7.2122,803,068 - 22,862,204 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl122,804,418 - 22,860,971 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx122,583,367 - 22,637,021 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0128,583,147 - 28,636,808 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0122,780,414 - 22,834,081 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0124,003,625 - 24,056,373 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl124,003,625 - 24,056,373 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0125,467,855 - 25,520,421 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4123,321,411 - 23,376,407 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1123,326,423 - 23,379,489 (-)NCBI
Celera121,531,904 - 21,584,938 (-)NCBICelera
Cytogenetic Map1p12NCBI
Slc2a12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554392,484,200 - 2,539,510 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554392,482,440 - 2,539,510 (+)NCBIChiLan1.0ChiLan1.0
SLC2A12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25153,961,292 - 154,026,300 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16151,867,798 - 151,932,782 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06131,754,601 - 131,820,042 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16135,855,081 - 135,918,771 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6135,853,958 - 135,919,548 (-)Ensemblpanpan1.1panPan2
SLC2A12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1126,910,535 - 26,993,858 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl126,911,334 - 26,994,576 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha127,791,462 - 27,875,173 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0127,068,574 - 27,152,390 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl127,069,863 - 27,152,307 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1126,952,239 - 27,035,856 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0126,832,322 - 26,916,031 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0127,141,785 - 27,225,706 (-)NCBIUU_Cfam_GSD_1.0
SLC2A12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl129,836,056 - 29,901,995 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1129,835,964 - 29,901,996 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2133,338,095 - 33,403,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC2A12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11339,420,767 - 39,486,544 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1339,421,621 - 39,484,094 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604011,606,306 - 11,672,894 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc2a12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624942766,578 - 833,181 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624942766,644 - 831,157 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000023036   ⟹   ENSSTOP00000017774
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365601,828,991 - 1,884,532 (-)Ensembl
RefSeq Acc Id: XM_005329777   ⟹   XP_005329834
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946122,052,271 - 122,105,245 (-)NCBI
SpeTri2.0NW_0049365601,833,309 - 1,884,455 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040283354   ⟹   XP_040139288
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946122,054,666 - 122,105,249 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005329834 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139288 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000017774.1
GenBank Protein KAG3290287 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005329834   ⟸   XM_005329777
- Peptide Label: isoform X1
- UniProtKB: I3N078 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040139288   ⟸   XM_040283354
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000017774   ⟸   ENSSTOT00000023036
Protein Domains
Major facilitator superfamily (MFS) profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027759 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023036.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS_dom UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Sugar/inositol_transpt UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/TrEMBL
NCBI Gene Slc2a12 ENTREZGENE
PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER MEMBER 12 UniProtKB/TrEMBL
Pfam Sugar_tr UniProtKB/TrEMBL
PRINTS SUGRTRNSPORT UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
  SUGAR_TRANSPORT_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt I3N078 ENTREZGENE, UniProtKB/TrEMBL