Arf5 (ADP ribosylation factor 5) - Rat Genome Database

Name: Arf5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Arf5 (ADP ribosylation factor 5) Ictidomys tridecemlineatus

Analyze

Symbol:

Arf5

Name:

ADP ribosylation factor 5

RGD ID:

12732144

Description:

ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); nucleotide binding (inferred); INVOLVED IN intracellular protein transport (inferred); protein transport (inferred); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (inferred); PARTICIPATES IN phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (inferred); Golgi apparatus (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ADP-ribosylation factor 5

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	53,666,834 - 53,669,835 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936479	14,790,519 - 14,793,733 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936479	14,790,552 - 14,793,604 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IEA)

protein transport (IEA)

retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (IEA)

vesicle-mediated transport (IEA)

Cellular Component

cytoplasm (IEA)

Golgi apparatus (IEA)

plasma membrane (IEA)

Molecular Function

GTP binding (IEA)

GTPase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

phosphatidylinositol 3-kinase class I signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Arf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	53,666,834 - 53,669,835 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936479	14,790,519 - 14,793,733 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936479	14,790,552 - 14,793,604 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARF5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	127,588,411 - 127,591,700 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	127,588,386 - 127,591,700 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	127,228,465 - 127,231,754 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	127,015,753 - 127,018,988 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	126,822,467 - 126,825,703	NCBI
Celera	7	122,032,245 - 122,035,480 (+)	NCBI		Celera
Cytogenetic Map	7	q32.1	NCBI
HuRef	7	121,589,476 - 121,592,829 (+)	NCBI		HuRef
CHM1_1	7	127,161,703 - 127,165,056 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	128,900,090 - 128,903,379 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	126,611,851 - 126,615,204 (+)	NCBI

Arf5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	28,423,603 - 28,426,601 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	28,423,559 - 28,426,601 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	28,423,604 - 28,426,602 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	28,423,560 - 28,426,602 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	28,373,640 - 28,376,499 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	28,373,650 - 28,376,509 (+)	NCBI		MGSCv36	mm8
Celera	6	28,430,700 - 28,433,539 (+)	NCBI		Celera
Cytogenetic Map	6	A3.3	NCBI
cM Map	6	11.99	NCBI

Arf5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	58,003,919 - 58,006,898 (+)	NCBI		GRCr8
mRatBN7.2	4	57,038,521 - 57,041,447 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	57,038,521 - 57,041,441 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	62,021,750 - 62,024,681 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	57,937,702 - 57,940,638 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	56,339,794 - 56,342,725 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	55,715,744 - 55,718,670 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	55,715,744 - 55,718,670 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	55,463,191 - 55,466,117 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	55,293,825 - 55,296,751 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	55,543,981 - 55,546,908 (+)	NCBI
Celera	4	52,150,105 - 52,153,031 (+)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

Arf5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955479	8,644,658 - 8,647,697 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955479	8,644,658 - 8,647,697 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARF5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	164,447,503 - 164,450,855 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	16,457,764 - 16,461,106 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	119,583,955 - 119,587,272 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	132,239,114 - 132,242,323 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	132,239,114 - 132,242,323 (+)	Ensembl	panpan1.1		panPan2

ARF5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	8,732,305 - 8,735,427 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	8,732,479 - 8,735,419 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	8,425,123 - 8,428,255 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	8,505,833 - 8,508,962 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	8,506,007 - 8,508,943 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	8,710,066 - 8,713,195 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	8,444,533 - 8,447,665 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	8,598,297 - 8,601,427 (-)	NCBI		UU_Cfam_GSD_1.0

ARF5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	20,694,966 - 20,698,726 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	20,695,706 - 20,698,635 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	21,699,373 - 21,702,302 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARF5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	96,403,360 - 96,406,901 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	96,403,609 - 96,407,215 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	7,000,073 - 7,003,409 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arf5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624783	8,357,152 - 8,360,067 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624783	8,357,152 - 8,360,083 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005319410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000002102 ⟹ ENSSTOP00000001873

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936479	14,790,519 - 14,793,733 (+)	Ensembl

RefSeq Acc Id:

XM_005319410 ⟹ XP_005319467

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	53,666,834 - 53,669,835 (+)	NCBI
SpeTri2.0	NW_004936479	14,790,552 - 14,793,604 (+)	NCBI

Sequence:

show sequence

CGGAGCCGCGTGACGTCCACCGGGCCGGGACGCGCGGAGGCGGAGGCGCCTCTTCCTGCTGCTG
CTGCGCCCCATCCCCCCGCGGCCGGCAGGTTCCAGCCCGTACCCCGCGTCCGCGCCCGCGCCCC
CGCCCCCGGGCCCCGCCATGGGCCTCACCGTGTCCGCGCTCTTTTCGCGGATCTTCGGGAAGAA
GCAGATGCGGATCCTCATGGTTGGCTTGGATGCAGCTGGCAAGACTACGATCCTGTACAAACTG
AAGTTGGGGGAGATTGTCACCACCATCCCCACCATAGGCTTCAACGTGGAAACAGTGGAATATA
AGAACATCTGTTTCACAGTCTGGGATGTGGGAGGCCAGGACAAGATTCGGCCTCTGTGGCGGCA
CTACTTCCAGAACACTCAGGGCCTCATCTTTGTGGTGGACAGTAATGACCGGGAGCGAGTCCAG
GAGTCTGCTGATGAACTCCAGAAGATGCTGCAGGAGGACGAGCTGCGGGATGCGGTGCTGCTGG
TGTTTGCCAACAAGCAGGACATGCCCAATGCCATGCCTGTGAGCGAGCTGACTGACAAGCTGGG
GCTACAGCACTTGCGCAGCCGTACGTGGTACGTCCAGGCCACCTGTGCCACCCAAGGCACAGGC
CTATATGATGGGCTGGACTGGCTGTCCCATGAGCTGTCAAAGCGTTAACTCGCCAGGGGCAGGC
CCCTGCTGCCCGGAAGCTCCCGCGTGCATCCCCGGGATTACCAGACTCCCGGGCTCCTCAGGCA
GTGCCCTTCCCTCCCACTCTTCCCCCCCACAGACAGGCCTCTGCTCCTGCTCCTGCCTGCATGT
TCTCTCTGTCGTTGGAGCCTGGAGCCTCACTCTCTGGGCACAGAGGGGTCCACTGTCCTGCCTG
CTGGGACCTGCGGAAGGGCTTCCTGGCCAAGGCCCCCTCATCCAGAGGAGGAGCAGGGATCTGG
GTTTACTTTTGTTTTTTCTGTTTTGGGTGTACCCTTGGGGCCAGGTTGTGGGGGTGGGGGGAAG
TGAGGGCTCCGGGTGGTGCTATGATGTGGAACTGGATATTGAGTAATAAATTTGCTGTGGTTTG
TA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005319467	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000001873.2
GenBank Protein	KAG3277739	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005319467 ⟸ XM_005319410
- UniProtKB:	I3LZS4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFT VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQ DMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR hide sequence

RefSeq Acc Id:

ENSSTOP00000001873 ⟸ ENSSTOT00000002102

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000002104	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000002102.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	Arf1_5_like	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/TrEMBL
	Small_GTPase_ARF/SAR	UniProtKB/TrEMBL
NCBI Gene	Arf5	ENTREZGENE
PANTHER	ADP-RIBOSYLATION FACTOR 5	UniProtKB/TrEMBL
	PTHR11711	UniProtKB/TrEMBL
Pfam	Arf	UniProtKB/TrEMBL
PRINTS	SAR1GTPBP	UniProtKB/TrEMBL
PROSITE	ARF	UniProtKB/TrEMBL
SMART	ARF	UniProtKB/TrEMBL
	RAB	UniProtKB/TrEMBL
	SAR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	I3LZS4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - PID (archival)