Pja1 (praja ring finger ubiquitin ligase 1)

Gene: Pja1 (praja ring finger ubiquitin ligase 1) Ictidomys tridecemlineatus

Analyze

Symbol:

Pja1

Name:

praja ring finger ubiquitin ligase 1

RGD ID:

12731876

Description:

ENCODES a protein that exhibits metal ion binding (inferred); transferase activity (inferred); ubiquitin protein ligase activity (inferred); INVOLVED IN protein catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); craniofrontonasal syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

E3 ubiquitin-protein ligase Praja-1; praja ring finger ubiquitin ligase 1, transcript variant X1; praja ring finger ubiquitin ligase 1, transcript variant X2; praja ring finger ubiquitin ligase 1, transcript variant X3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	48,433,167 - 48,438,204 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936777	796,756 - 798,726 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936777	796,101 - 801,111 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

craniofrontonasal syndrome (ISO)

genetic disease (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein catabolic process (IEA,ISO)

protein ubiquitination (IEA)

Cellular Component

cytoplasm (IEA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IEA)

References

Genomics

Comparative Map Data

Pja1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	48,433,167 - 48,438,204 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936777	796,756 - 798,726 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936777	796,101 - 801,111 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PJA1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	69,160,746 - 69,165,453 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	69,160,851 - 69,165,521 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	68,380,589 - 68,385,296 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	68,297,422 - 68,302,065 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	68,163,718 - 68,166,409	NCBI
Celera	X	68,733,493 - 68,738,277 (-)	NCBI		Celera
Cytogenetic Map	X	q13.1	NCBI
HuRef	X	62,204,531 - 62,209,313 (-)	NCBI		HuRef
CHM1_1	X	68,273,990 - 68,278,774 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	67,594,126 - 67,598,833 (-)	NCBI		T2T-CHM13v2.0

Pja1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	98,509,344 - 98,514,874 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	98,509,340 - 98,514,879 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	99,465,734 - 99,471,268 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	99,465,734 - 99,471,273 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	96,661,073 - 96,666,074 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	95,668,865 - 95,673,391 (-)	NCBI		MGSCv36	mm8
Celera	X	86,405,285 - 86,410,248 (-)	NCBI		Celera
Cytogenetic Map	X	C3	NCBI
cM Map	X	43.38	NCBI

Pja1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	68,621,101 - 68,626,001 (-)	NCBI		GRCr8
mRatBN7.2	X	64,580,938 - 64,585,846 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	64,580,849 - 64,585,833 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	66,064,443 - 66,069,292 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	69,564,800 - 69,569,649 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	67,125,694 - 67,130,543 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	69,213,645 - 69,218,601 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	69,213,645 - 69,218,556 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	70,086,011 - 70,090,962 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	X	64,945,766 - 64,948,345 (-)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

Pja1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955475	8,688,888 - 8,690,720 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955475	8,688,467 - 8,693,010 (-)	NCBI	ChiLan1.0	ChiLan1.0

PJA1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	68,809,765 - 68,814,474 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	68,813,368 - 68,818,077 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	58,400,899 - 58,405,697 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	68,464,681 - 68,469,343 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

PJA1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	53,608,459 - 53,614,270 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	44,435,116 - 44,439,770 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	54,575,157 - 54,579,816 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	54,574,010 - 54,579,774 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	52,543,076 - 52,547,730 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	53,871,826 - 53,876,483 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	53,795,660 - 53,800,314 (-)	NCBI		UU_Cfam_GSD_1.0

PJA1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	55,274,298 - 55,280,530 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	55,274,294 - 55,280,583 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	62,339,803 - 62,346,075 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PJA1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	58,997,686 - 59,002,361 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	58,998,132 - 59,000,066 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	855,813 - 860,490 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pja1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624891	1,085,068 - 1,086,903 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624891	1,082,774 - 1,087,338 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013365128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000024080 ⟹ ENSSTOP00000022066

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936777	796,756 - 798,726 (-)	Ensembl

RefSeq Acc Id:

XM_013365128 ⟹ XP_013220582

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	48,433,167 - 48,438,204 (+)	NCBI
SpeTri2.0	NW_004936777	796,101 - 801,111 (-)	NCBI

Sequence:

show sequence

CCCTCCCGGGTGCTGTCTGGTGGAGGAGGAGCCCGAGACCCGGGAGCAGCGGCTCTGGCGGTGG
TGGCGGTCGGAGGTCTGAGAGCTCTGCCCCTTTGAAAAACGTGCTGCTGTCCCGACAGGGTCTA
CACCTGACAGTCACTGGAATGCTCCTCCAGGCCTTAGAAGAAAGTGAAAGTAATTTTAAAGATC
CCTTGTCCCTTCTGTTACCTGTCTGCTGACGTGAAAATAGATCTTCCTGCTCCTTCATGCTGAA
CTGATTTTGACTTTCCCAGCTCAAAAAGCACAAGTGCAGGGAGCAGGAACCTTTCCACCCAAGC
CCCAGCTCTATTGGAAACCTTCCTAAACCAGAGCAATGGGTCAGGAATCTAGCAAGCCCGTATG
GCCCAAACCAGCAGGAGGGTATCAGTCCAATACAGGCAGGAGGTATGGAAGAAGGCATGCTTAT
GTCAGTTTCAGGCCATCCACGAGCCAGCAGGAAAGGATTGCCAGCCAGAGAAAGACGACATCCG
AAGTCCCAATGCACAGATCAGCCCCCAGTCAAACCACCAAGAGGAGCCGATCACCATTTGCCAC
CACTCGTCGTAGTTGGGACGACTGTGAGAGTTCGGGAACCAGCCTGAATGTTGATAATGAGGAC
TATTCCAGGTATCCGCCAAGAGAGTACAGGGCTTCGGGTGGCAGAAGAGGAATGGCTTATGGAC
ATATTGACACTTTGGGGGCAGATGATAGTGAGGAGGAGGGGGCTGGGCCTGTTGAGCGACCGCC
AGTGAGAGGGAAAACTGGCAAGTTTAAGGATGATAAGCTGTATGACCCAGAAAAAGGGGCAAGG
TCTGTGGCGGGGGTGCCTCCCCAGTTCTCTGGTTTTAACTGTGATGTGAGAGAGGAGCTTGACA
AGTTAGACCCAGCCCCTGTGGCGAGATGCTCTGCTAGCCCAGCAGAGTTCCGGAAGCCGACTAG
CATGGGCTCTCAGATGTCTTCTGCTGAAGGCAAGGTGGCTACAACTGGTGACAGTTTGGAGAGG
GAGAGAAGGGGGCAGAACTTGACTGCACGTCCCAGTAGGGCTCCTGTGAGTATTTGTGGTGGTG
GGGGAAACCCCTCAAAGAGTGCAGAGGAACCGGTGGTGAGGCCCAAAGTCCGAAATCTGGCAAG
TCCAAACTGCGTGAAACCAAAAATATTTTTTGATACTGATGATGATGATGATATGCCACACAGT
ACTTCCAGGTGGAGGGATGCTGTCAATGCTGATGATGGCCACTTGGATGGCCTGGCAAGGAGAG
GCAGAGGCGAGAGTTCAAGTGGCTACTGTGAGCCCAAGTACTCTGAAGACAAGAGGGAGGCCAG
GAATGACCAAGTGAAACCAGAGAAGGTGCCGAGGAGGCGTCGGACCATGGCGGACCCCGACTTC
TGGACGTATAGTGATGATTACTACAAATACTGTGATGAAGACTCTGACAGCGACAAAGAGTGGA
TCGCTGCCCTGCGCCGGAAGTACCGAAATCGAGAGCAAACACTGTCCTCAAGTGGAGAAAGCTG
GGAGACCCTGCCAGGAAAGGAAGACCGGGAACCTCAGCAAGCCAGAGTGAGTGGAAGTGTCACC
GACACCAGCCCAAGCCTTGGGACTGGAGCCAGCGCCGTTGCCGGAGCCAGTACCACTGCCGGAG
CCAGCGCCATTGCAGGTGCCAGCACCATTGCCGGAGCCAGTGCCATTGCCGGAGCCAGTGCCAT
TGCCGGTGCCAGCGCCATTGCTGGAGCCAGTGCCGTTGCCAGTGCGGGTGCCGGCGCCAGCGTC
AGTGCAGGTGCTGTGAGCAATGGCAGTAGCTATCTTGAGGAAGCTCAAGGGCCACCGCTGCAGG
AAGAGGAGCAAACATCCCTGGAAGAAGGAGAAATTCCCTGGCTCCAGTACAATGAGAATGAGAG
CAGCAGTGAGGGAGACAACGACTCCGGGCAGGAGCTGATGCAGCCGGGGGTGTTCGTGCTGGAT
GGCAACAACAACCTCGAAGATGACTCCAGCGTCAGCGAAGACCTCGAAGTGGATTGGAGCCTCT
TTGATGGATTTGCCGATGGGTTAGGAGTGGCCGAAGCCATTTCCTATGTGGATCCTCAGTTCCT
CACCTACATGGCACTTGAGGAACGCCTGGCACAGGCGATGGAGACTGCCTTGGCACACCTGGAG
TCTCTCGCAGTGGATGTCGAGGTGGCCAATCCACCGGCCAGCAAGGAGAGCATCGACGCTCTTC
CCGAGATCCTGGTCACTGAAGATCATGGTGCAGTTGGCCAAGAGATGTGCTGTCCTATCTGCTG
CAGTGAATATGTGAAGGGGGAAGTGGCGACCGAGCTTCCATGCCACCACTATTTCCACAAGCCC
TGCGTGTCCATCTGGCTTCAGAAGTCAGGCACATGCCCTGTGTGCCGCTGCATGTTCCCTCCTC
CACTCTAAAGACCAAGGCTTTTTTTTACTCCTGGTCTGTTTATTTTCCCCATACCTGAAACCCA
CAATACTGCAGGAGCCCTCTGAAAATTAATAATGAAAATGAAACCATTTGGTCAATTAGACTAA
ACTTGTTGATTCCTTGTGATTATTTCCAATGTGAAAACGGTTGTGTGCGGTTGCATTAAAAATC
ATAATTGTCCTAGCCAGGTGTGTGGGGGGGCACACACCTGTCATCCTGGCAACTTTAGAGGCTG
AGGCAGGAGGATTGCAAGTTCAAGCCAGCCTGGGCAACTTGGTGAGACCCTATCTAAAAGCTGG
GGGGTATAGCTCAGGGGTAGAGCACTCCTGGATTCAGTCCATAGTATCACACACACACATACAC
ACAAATAAATCATATTGTCTTAGAGGTTAGAAAGGAAAAACTAAACTTTCTAAATGCTACTTGA
GCGTGCACTAAGAGCATACATTTTCTAACCCAAAAGTCGGAACAAATGGCATTTGTTTTCTTCA
GTAGAATATGTTGCTGTTAATTGTAATGTCAAGTTTATCTGTTAACTATGTCCAAAAGGCAAAA
TAATTTTTGTTGCATGTTCTGGGTTAACGTTCCTGTAATTGCAGTGCCGTAAAAGCTTATTAAA
GTACTTTTGGTTTTACACGGTAA

hide sequence

RefSeq Acc Id:

XM_013365129 ⟹ XP_013220583

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	48,433,167 - 48,438,204 (+)	NCBI
SpeTri2.0	NW_004936777	796,101 - 801,111 (-)	NCBI

Sequence:

show sequence

CCCTCCCGGGTGCTGTCTGGTGGAGGAGGAGCCCGAGACCCGGGAGCAGCGGCTCTGGCGGTGG
TGGCGGTCGGAGGTCTGAGAGCTCTGCCCCTTTGAAAAACGTGCTGCTGTCCCGACAGGTTTCA
GGCCATCCACGAGCCAGCAGGAAAGGATTGCCAGCCAGAGAAAGACGACATCCGAAGTCCCAAT
GCACAGATCAGCCCCCAGTCAAACCACCAAGAGGAGCCGATCACCATTTGCCACCACTCGTCGT
AGTTGGGACGACTGTGAGAGTTCGGGAACCAGCCTGAATGTTGATAATGAGGACTATTCCAGGT
ATCCGCCAAGAGAGTACAGGGCTTCGGGTGGCAGAAGAGGAATGGCTTATGGACATATTGACAC
TTTGGGGGCAGATGATAGTGAGGAGGAGGGGGCTGGGCCTGTTGAGCGACCGCCAGTGAGAGGG
AAAACTGGCAAGTTTAAGGATGATAAGCTGTATGACCCAGAAAAAGGGGCAAGGTCTGTGGCGG
GGGTGCCTCCCCAGTTCTCTGGTTTTAACTGTGATGTGAGAGAGGAGCTTGACAAGTTAGACCC
AGCCCCTGTGGCGAGATGCTCTGCTAGCCCAGCAGAGTTCCGGAAGCCGACTAGCATGGGCTCT
CAGATGTCTTCTGCTGAAGGCAAGGTGGCTACAACTGGTGACAGTTTGGAGAGGGAGAGAAGGG
GGCAGAACTTGACTGCACGTCCCAGTAGGGCTCCTGTGAGTATTTGTGGTGGTGGGGGAAACCC
CTCAAAGAGTGCAGAGGAACCGGTGGTGAGGCCCAAAGTCCGAAATCTGGCAAGTCCAAACTGC
GTGAAACCAAAAATATTTTTTGATACTGATGATGATGATGATATGCCACACAGTACTTCCAGGT
GGAGGGATGCTGTCAATGCTGATGATGGCCACTTGGATGGCCTGGCAAGGAGAGGCAGAGGCGA
GAGTTCAAGTGGCTACTGTGAGCCCAAGTACTCTGAAGACAAGAGGGAGGCCAGGAATGACCAA
GTGAAACCAGAGAAGGTGCCGAGGAGGCGTCGGACCATGGCGGACCCCGACTTCTGGACGTATA
GTGATGATTACTACAAATACTGTGATGAAGACTCTGACAGCGACAAAGAGTGGATCGCTGCCCT
GCGCCGGAAGTACCGAAATCGAGAGCAAACACTGTCCTCAAGTGGAGAAAGCTGGGAGACCCTG
CCAGGAAAGGAAGACCGGGAACCTCAGCAAGCCAGAGTGAGTGGAAGTGTCACCGACACCAGCC
CAAGCCTTGGGACTGGAGCCAGCGCCGTTGCCGGAGCCAGTACCACTGCCGGAGCCAGCGCCAT
TGCAGGTGCCAGCACCATTGCCGGAGCCAGTGCCATTGCCGGAGCCAGTGCCATTGCCGGTGCC
AGCGCCATTGCTGGAGCCAGTGCCGTTGCCAGTGCGGGTGCCGGCGCCAGCGTCAGTGCAGGTG
CTGTGAGCAATGGCAGTAGCTATCTTGAGGAAGCTCAAGGGCCACCGCTGCAGGAAGAGGAGCA
AACATCCCTGGAAGAAGGAGAAATTCCCTGGCTCCAGTACAATGAGAATGAGAGCAGCAGTGAG
GGAGACAACGACTCCGGGCAGGAGCTGATGCAGCCGGGGGTGTTCGTGCTGGATGGCAACAACA
ACCTCGAAGATGACTCCAGCGTCAGCGAAGACCTCGAAGTGGATTGGAGCCTCTTTGATGGATT
TGCCGATGGGTTAGGAGTGGCCGAAGCCATTTCCTATGTGGATCCTCAGTTCCTCACCTACATG
GCACTTGAGGAACGCCTGGCACAGGCGATGGAGACTGCCTTGGCACACCTGGAGTCTCTCGCAG
TGGATGTCGAGGTGGCCAATCCACCGGCCAGCAAGGAGAGCATCGACGCTCTTCCCGAGATCCT
GGTCACTGAAGATCATGGTGCAGTTGGCCAAGAGATGTGCTGTCCTATCTGCTGCAGTGAATAT
GTGAAGGGGGAAGTGGCGACCGAGCTTCCATGCCACCACTATTTCCACAAGCCCTGCGTGTCCA
TCTGGCTTCAGAAGTCAGGCACATGCCCTGTGTGCCGCTGCATGTTCCCTCCTCCACTCTAAAG
ACCAAGGCTTTTTTTTACTCCTGGTCTGTTTATTTTCCCCATACCTGAAACCCACAATACTGCA
GGAGCCCTCTGAAAATTAATAATGAAAATGAAACCATTTGGTCAATTAGACTAAACTTGTTGAT
TCCTTGTGATTATTTCCAATGTGAAAACGGTTGTGTGCGGTTGCATTAAAAATCATAATTGTCC
TAGCCAGGTGTGTGGGGGGGCACACACCTGTCATCCTGGCAACTTTAGAGGCTGAGGCAGGAGG
ATTGCAAGTTCAAGCCAGCCTGGGCAACTTGGTGAGACCCTATCTAAAAGCTGGGGGGTATAGC
TCAGGGGTAGAGCACTCCTGGATTCAGTCCATAGTATCACACACACACATACACACAAATAAAT
CATATTGTCTTAGAGGTTAGAAAGGAAAAACTAAACTTTCTAAATGCTACTTGAGCGTGCACTA
AGAGCATACATTTTCTAACCCAAAAGTCGGAACAAATGGCATTTGTTTTCTTCAGTAGAATATG
TTGCTGTTAATTGTAATGTCAAGTTTATCTGTTAACTATGTCCAAAAGGCAAAATAATTTTTGT
TGCATGTTCTGGGTTAACGTTCCTGTAATTGCAGTGCCGTAAAAGCTTATTAAAGTACTTTTGG
TTTTACACGGTAA

hide sequence

RefSeq Acc Id:

XM_013365130 ⟹ XP_013220584

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	X	48,433,167 - 48,438,204 (+)	NCBI
SpeTri2.0	NW_004936777	796,101 - 801,111 (-)	NCBI

Sequence:

show sequence

CCCTCCCGGGTGCTGTCTGGTGGAGGAGGAGCCCGAGACCCGGGAGCAGCGGCTCTGGCGGTGG
TGGCGGTCGGAGGTCTGAGAGCTCTGCCCCTTTGAAAAACGTGCTGCTGTCCCGACAGGGTCTA
CACCTGACAGTCACTGGAATGCTCCTCCAGGCCTTAGAAGAAAGTGAAAGTAATTTTAAAGATC
CCTTGTCCCTTCTGTTACCTGTCTGCTGACGTGAAAATAGATCTTCCTGCTCCTTCATGCTGAA
CTGATTTTGACTTTCCCAGCTCAAAAAGCACAAGTGCAGGGAGCAGGAACCTTTCCACCCAAGC
CCCAGCTCTATTGGAAACCTTCCTAAACCAGAGCAATGGGTCAGGAATCTAGCAAGCCCGTATG
GCCCAAACCAGCAGGAGGGTATCAGTCCAATACAGGCAGGAGGTATGGAAGAAGGCATGCTTAT
GTCAGTTTCAGGCCATCCACGAGCCAGCAGGAAAGGATTGCCAGCCAGAGAAAGACGACATCCG
AAGTCCCAATGCACAGATCAGCCCCCAGTCAAACCACCAAGAGGAGCCGATCACCATTTGCCAC
CACTCGTCGTAGTTGGGACGACTGTGAGAGTTCGGGAACCAGCCTGAATGTTGATAATGAGGAC
TATTCCAGTACTTCCAGGTGGAGGGATGCTGTCAATGCTGATGATGGCCACTTGGATGGCCTGG
CAAGGAGAGGCAGAGGCGAGAGTTCAAGTGGCTACTGTGAGCCCAAGTACTCTGAAGACAAGAG
GGAGGCCAGGAATGACCAAGTGAAACCAGAGAAGGTGCCGAGGAGGCGTCGGACCATGGCGGAC
CCCGACTTCTGGACGTATAGTGATGATTACTACAAATACTGTGATGAAGACTCTGACAGCGACA
AAGAGTGGATCGCTGCCCTGCGCCGGAAGTACCGAAATCGAGAGCAAACACTGTCCTCAAGTGG
AGAAAGCTGGGAGACCCTGCCAGGAAAGGAAGACCGGGAACCTCAGCAAGCCAGAGTGAGTGGA
AGTGTCACCGACACCAGCCCAAGCCTTGGGACTGGAGCCAGCGCCGTTGCCGGAGCCAGTACCA
CTGCCGGAGCCAGCGCCATTGCAGGTGCCAGCACCATTGCCGGAGCCAGTGCCATTGCCGGAGC
CAGTGCCATTGCCGGTGCCAGCGCCATTGCTGGAGCCAGTGCCGTTGCCAGTGCGGGTGCCGGC
GCCAGCGTCAGTGCAGGTGCTGTGAGCAATGGCAGTAGCTATCTTGAGGAAGCTCAAGGGCCAC
CGCTGCAGGAAGAGGAGCAAACATCCCTGGAAGAAGGAGAAATTCCCTGGCTCCAGTACAATGA
GAATGAGAGCAGCAGTGAGGGAGACAACGACTCCGGGCAGGAGCTGATGCAGCCGGGGGTGTTC
GTGCTGGATGGCAACAACAACCTCGAAGATGACTCCAGCGTCAGCGAAGACCTCGAAGTGGATT
GGAGCCTCTTTGATGGATTTGCCGATGGGTTAGGAGTGGCCGAAGCCATTTCCTATGTGGATCC
TCAGTTCCTCACCTACATGGCACTTGAGGAACGCCTGGCACAGGCGATGGAGACTGCCTTGGCA
CACCTGGAGTCTCTCGCAGTGGATGTCGAGGTGGCCAATCCACCGGCCAGCAAGGAGAGCATCG
ACGCTCTTCCCGAGATCCTGGTCACTGAAGATCATGGTGCAGTTGGCCAAGAGATGTGCTGTCC
TATCTGCTGCAGTGAATATGTGAAGGGGGAAGTGGCGACCGAGCTTCCATGCCACCACTATTTC
CACAAGCCCTGCGTGTCCATCTGGCTTCAGAAGTCAGGCACATGCCCTGTGTGCCGCTGCATGT
TCCCTCCTCCACTCTAAAGACCAAGGCTTTTTTTTACTCCTGGTCTGTTTATTTTCCCCATACC
TGAAACCCACAATACTGCAGGAGCCCTCTGAAAATTAATAATGAAAATGAAACCATTTGGTCAA
TTAGACTAAACTTGTTGATTCCTTGTGATTATTTCCAATGTGAAAACGGTTGTGTGCGGTTGCA
TTAAAAATCATAATTGTCCTAGCCAGGTGTGTGGGGGGGCACACACCTGTCATCCTGGCAACTT
TAGAGGCTGAGGCAGGAGGATTGCAAGTTCAAGCCAGCCTGGGCAACTTGGTGAGACCCTATCT
AAAAGCTGGGGGGTATAGCTCAGGGGTAGAGCACTCCTGGATTCAGTCCATAGTATCACACACA
CACATACACACAAATAAATCATATTGTCTTAGAGGTTAGAAAGGAAAAACTAAACTTTCTAAAT
GCTACTTGAGCGTGCACTAAGAGCATACATTTTCTAACCCAAAAGTCGGAACAAATGGCATTTG
TTTTCTTCAGTAGAATATGTTGCTGTTAATTGTAATGTCAAGTTTATCTGTTAACTATGTCCAA
AAGGCAAAATAATTTTTGTTGCATGTTCTGGGTTAACGTTCCTGTAATTGCAGTGCCGTAAAAG
CTTATTAAAGTACTTTTGGTTTTACACGGTAA

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Protein Sequences


Protein RefSeqs	XP_013220582	(Get FASTA)	NCBI Sequence Viewer
	XP_013220583	(Get FASTA)	NCBI Sequence Viewer
	XP_013220584	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000022066.2
GenBank Protein	KAG3272405	(Get FASTA)	NCBI Sequence Viewer
	KAG3272406	(Get FASTA)	NCBI Sequence Viewer
	KAG3272407	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013220584 ⟸ XM_013365130

- Peptide Label:

isoform X3

- Sequence:

show sequence

MGQESSKPVWPKPAGGYQSNTGRRYGRRHAYVSFRPSTSQQERIASQRKTTSEVPMHRSAPSQT
TKRSRSPFATTRRSWDDCESSGTSLNVDNEDYSSTSRWRDAVNADDGHLDGLARRGRGESSSGY
CEPKYSEDKREARNDQVKPEKVPRRRRTMADPDFWTYSDDYYKYCDEDSDSDKEWIAALRRKYR
NREQTLSSSGESWETLPGKEDREPQQARVSGSVTDTSPSLGTGASAVAGASTTAGASAIAGAST
IAGASAIAGASAIAGASAIAGASAVASAGAGASVSAGAVSNGSSYLEEAQGPPLQEEEQTSLEE
GEIPWLQYNENESSSEGDNDSGQELMQPGVFVLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLG
VAEAISYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDH
GAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL

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RefSeq Acc Id:	XP_013220582 ⟸ XM_013365128
- Peptide Label:	isoform X1
- UniProtKB:	I3NCG9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGQESSKPVWPKPAGGYQSNTGRRYGRRHAYVSFRPSTSQQERIASQRKTTSEVPMHRSAPSQT TKRSRSPFATTRRSWDDCESSGTSLNVDNEDYSRYPPREYRASGGRRGMAYGHIDTLGADDSEE EGAGPVERPPVRGKTGKFKDDKLYDPEKGARSVAGVPPQFSGFNCDVREELDKLDPAPVARCSA SPAEFRKPTSMGSQMSSAEGKVATTGDSLERERRGQNLTARPSRAPVSICGGGGNPSKSAEEPV VRPKVRNLASPNCVKPKIFFDTDDDDDMPHSTSRWRDAVNADDGHLDGLARRGRGESSSGYCEP KYSEDKREARNDQVKPEKVPRRRRTMADPDFWTYSDDYYKYCDEDSDSDKEWIAALRRKYRNRE QTLSSSGESWETLPGKEDREPQQARVSGSVTDTSPSLGTGASAVAGASTTAGASAIAGASTIAG ASAIAGASAIAGASAIAGASAVASAGAGASVSAGAVSNGSSYLEEAQGPPLQEEEQTSLEEGEI PWLQYNENESSSEGDNDSGQELMQPGVFVLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAE AISYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAV GQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL hide sequence

RefSeq Acc Id:	XP_013220583 ⟸ XM_013365129
- Peptide Label:	isoform X2
- UniProtKB:	I3NCG9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHRSAPSQTTKRSRSPFATTRRSWDDCESSGTSLNVDNEDYSRYPPREYRASGGRRGMAYGHID TLGADDSEEEGAGPVERPPVRGKTGKFKDDKLYDPEKGARSVAGVPPQFSGFNCDVREELDKLD PAPVARCSASPAEFRKPTSMGSQMSSAEGKVATTGDSLERERRGQNLTARPSRAPVSICGGGGN PSKSAEEPVVRPKVRNLASPNCVKPKIFFDTDDDDDMPHSTSRWRDAVNADDGHLDGLARRGRG ESSSGYCEPKYSEDKREARNDQVKPEKVPRRRRTMADPDFWTYSDDYYKYCDEDSDSDKEWIAA LRRKYRNREQTLSSSGESWETLPGKEDREPQQARVSGSVTDTSPSLGTGASAVAGASTTAGASA IAGASTIAGASAIAGASAIAGASAIAGASAVASAGAGASVSAGAVSNGSSYLEEAQGPPLQEEE QTSLEEGEIPWLQYNENESSSEGDNDSGQELMQPGVFVLDGNNNLEDDSSVSEDLEVDWSLFDG FADGLGVAEAISYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEI LVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL hide sequence

RefSeq Acc Id:

ENSSTOP00000022066 ⟸ ENSSTOT00000024080

Protein Domains

RING-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000022107	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024080.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
InterPro	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
NCBI Gene	Pja1	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	UniProtKB/TrEMBL
	PTHR15710:SF2	UniProtKB/TrEMBL
Pfam	zf-RING_2	UniProtKB/TrEMBL
PROSITE	ZF_RING_2	UniProtKB/TrEMBL
SMART	RING	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
UniProt	I3NCG9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD