Cdk2ap1 (cyclin dependent kinase 2 associated protein 1) - Rat Genome Database

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Gene: Cdk2ap1 (cyclin dependent kinase 2 associated protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: Cdk2ap1
Name: cyclin dependent kinase 2 associated protein 1
RGD ID: 12731842
Description: ENCODES a protein that exhibits DNA polymerase binding (ortholog); INVOLVED IN face morphogenesis (ortholog); in utero embryonic development (ortholog); positive regulation of protein phosphorylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin dependent kinase 2 associated protein 1, transcript variant X1; cyclin dependent kinase 2 associated protein 1, transcript variant X2; cyclin-dependent kinase 2-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,010,726 - 158,020,573 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365581,458,885 - 1,468,698 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cdk2ap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118158,010,726 - 158,020,573 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365581,458,885 - 1,468,698 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDK2AP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812123,260,976 - 123,272,240 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12123,250,112 - 123,272,334 (-)EnsemblGRCh38hg38GRCh38
GRCh3712123,745,523 - 123,756,787 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,311,491 - 122,322,640 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412122,270,420 - 122,281,567NCBI
Celera12123,337,112 - 123,348,266 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12120,706,698 - 120,717,993 (-)NCBIHuRef
CHM1_112123,713,797 - 123,725,124 (-)NCBICHM1_1
T2T-CHM13v2.012123,257,499 - 123,268,761 (-)NCBIT2T-CHM13v2.0
Cdk2ap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,483,502 - 124,492,691 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5124,483,480 - 124,501,145 (-)EnsemblGRCm39 Ensembl
GRCm385124,345,439 - 124,354,628 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,345,417 - 124,363,082 (-)EnsemblGRCm38mm10GRCm38
MGSCv375124,795,448 - 124,804,637 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365124,606,057 - 124,615,246 (-)NCBIMGSCv36mm8
Celera5121,420,899 - 121,429,855 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.53NCBI
Cdk2ap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,910,718 - 37,919,446 (+)NCBIGRCr8
mRatBN7.21232,249,752 - 32,258,483 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,249,747 - 32,258,479 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1233,429,132 - 33,437,872 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,040,461 - 34,049,199 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,092,339 - 33,101,075 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01237,668,369 - 37,677,067 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,668,369 - 37,677,063 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,538,931 - 39,539,222 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01239,545,402 - 39,549,786 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,365,372 - 33,374,597 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,228,844 - 33,237,985 (+)NCBI
Celera1233,942,086 - 33,946,470 (+)NCBICelera
Cytogenetic Map12q15NCBI
Cdk2ap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,588,674 - 5,593,896 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,588,683 - 5,593,896 (+)NCBIChiLan1.0ChiLan1.0
CDK2AP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210131,348,690 - 131,359,527 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112131,345,066 - 131,355,880 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012120,859,240 - 120,870,443 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112125,092,593 - 125,103,452 (-)NCBIpanpan1.1PanPan1.1panPan2
CDK2AP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,283,071 - 6,293,595 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1752,363,464 - 52,363,811 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,284,535 - 6,293,591 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,445,257 - 6,455,733 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0266,532,579 - 6,543,449 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl266,532,966 - 6,543,449 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1266,466,330 - 6,476,809 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,558,200 - 6,568,672 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0266,511,768 - 6,522,244 (+)NCBIUU_Cfam_GSD_1.0
CDK2AP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,631,084 - 29,642,253 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,631,084 - 29,642,262 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,321,811 - 31,332,455 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDK2AP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,602,354 - 118,613,006 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,603,089 - 118,612,971 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037126,696,959 - 126,708,401 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdk2ap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474723,195,459 - 23,205,387 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474723,195,459 - 23,205,612 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005329561   ⟹   XP_005329618
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118158,010,726 - 158,020,573 (-)NCBI
SpeTri2.0NW_0049365581,458,885 - 1,468,698 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729267   ⟹   XP_021584942
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118158,010,726 - 158,017,843 (-)NCBI
SpeTri2.0NW_0049365581,462,786 - 1,468,698 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005329618 (Get FASTA)   NCBI Sequence Viewer  
  XP_021584942 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014739.3
GenBank Protein KAG3279144 (Get FASTA)   NCBI Sequence Viewer  
  KAG3279145 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005329618   ⟸   XM_005329561
- UniProtKB: I3MRL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021584942   ⟸   XM_021729267
- UniProtKB: I3MRL4 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016464 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016468.3 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1300 UniProtKB/TrEMBL
InterPro DOC_1/2 UniProtKB/TrEMBL
NCBI Gene Cdk2ap1 ENTREZGENE
PANTHER CYCLIN-DEPENDENT KINASE 2-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR22607 UniProtKB/TrEMBL
Pfam CDK2AP UniProtKB/TrEMBL
PIRSF CDK2-associated_p2 UniProtKB/TrEMBL
UniProt I3MRL4 ENTREZGENE, UniProtKB/TrEMBL