Ppp1r3f (protein phosphatase 1 regulatory subunit 3F) - Rat Genome Database

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Gene: Ppp1r3f (protein phosphatase 1 regulatory subunit 3F) Ictidomys tridecemlineatus
Analyze
Symbol: Ppp1r3f
Name: protein phosphatase 1 regulatory subunit 3F
RGD ID: 12731618
Description: ENCODES a protein that exhibits glycogen binding (inferred); protein phosphatase 1 binding (inferred); protein phosphatase binding (inferred); INVOLVED IN regulation of glycogen biosynthetic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); protein phosphatase type 1 complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,897,570 - 34,912,854 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367211,137,916 - 1,156,151 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367211,137,998 - 1,153,243 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ppp1r3f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,897,570 - 34,912,854 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367211,137,916 - 1,156,151 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367211,137,998 - 1,153,243 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R3F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X49,269,793 - 49,301,469 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX49,269,793 - 49,301,461 (+)EnsemblGRCh38hg38GRCh38
GRCh37X49,126,256 - 49,144,552 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X49,013,261 - 49,031,021 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X48,882,687 - 48,900,448NCBI
CeleraX52,519,831 - 52,538,087 (-)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,782,559 - 46,800,422 (+)NCBIHuRef
CHM1_1X49,158,606 - 49,176,873 (+)NCBICHM1_1
T2T-CHM13v2.0X48,681,633 - 48,713,324 (+)NCBIT2T-CHM13v2.0
Ppp1r3f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,424,815 - 7,440,541 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,423,535 - 7,440,522 (-)EnsemblGRCm39 Ensembl
GRCm38X7,558,562 - 7,574,281 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,557,296 - 7,574,283 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X7,135,688 - 7,151,246 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,715,911 - 6,731,079 (-)NCBIMGSCv36mm8
CeleraX3,897,649 - 3,913,217 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.4NCBI
Ppp1r3f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,581,467 - 17,617,087 (+)NCBIGRCr8
mRatBN7.2X14,915,740 - 14,945,249 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,929,323 - 14,945,193 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X15,774,091 - 15,784,711 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X16,571,568 - 16,574,909 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,960,930 - 26,982,406 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX15,013,524 - 15,028,435 (+)NCBICelera
Cytogenetic MapXq12NCBI
Ppp1r3f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543750,323 - 766,797 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955543750,094 - 767,894 (+)NCBIChiLan1.0ChiLan1.0
PPP1R3F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,761,710 - 50,779,415 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,765,089 - 50,782,793 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,569,825 - 41,587,523 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,423,409 - 49,441,030 (+)NCBIpanpan1.1PanPan1.1panPan2
PPP1R3F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,362,335 - 42,378,480 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,362,370 - 42,378,012 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,741,035 - 16,757,531 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,504,009 - 42,520,511 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,504,000 - 42,520,117 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,487,950 - 42,504,446 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,475,407 - 42,491,905 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,570,374 - 42,586,874 (+)NCBIUU_Cfam_GSD_1.0
PPP1R3F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,328,274 - 43,344,013 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,328,199 - 43,344,503 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,176,169 - 48,192,444 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPP1R3F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,369,087 - 46,387,335 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX46,369,190 - 46,387,401 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607611,930,508 - 11,948,717 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r3f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248931,013,509 - 1,030,441 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248931,012,976 - 1,030,380 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005338691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000004432   ⟹   ENSSTOP00000003975
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367211,137,916 - 1,156,151 (+)Ensembl
RefSeq Acc Id: XM_005338691   ⟹   XP_005338748
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X34,897,570 - 34,912,854 (+)NCBI
SpeTri2.0NW_0049367211,137,998 - 1,153,243 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005338748 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003975.3
GenBank Protein KAG3272109 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005338748   ⟸   XM_005338691
- UniProtKB: I3M483 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000003975   ⟸   ENSSTOT00000004432
Protein Domains
CBM21


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004440 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004432.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.2440 UniProtKB/TrEMBL
InterPro CBM21_dom UniProtKB/TrEMBL
  CBM21_dom_sf UniProtKB/TrEMBL
NCBI Gene Ppp1r3f ENTREZGENE
PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT UniProtKB/TrEMBL
  PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 3F UniProtKB/TrEMBL
Pfam CBM_21 UniProtKB/TrEMBL
PROSITE CBM21 UniProtKB/TrEMBL
UniProt I3M483 ENTREZGENE, UniProtKB/TrEMBL