Stx1a (syntaxin 1A) - Rat Genome Database
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Gene: Stx1a (syntaxin 1A) Ictidomys tridecemlineatus
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Symbol: Stx1a
Name: syntaxin 1A
RGD ID: 12730390
Description: ENCODES a protein that exhibits ATP-dependent protein binding (ortholog); calcium channel inhibitor activity (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN calcium-ion regulated exocytosis (ortholog); hormone secretion (ortholog); insulin secretion (ortholog); PARTICIPATES IN insulin secretion pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Creutzfeldt-Jakob disease (ortholog); FOUND IN acrosomal vesicle (ortholog); actomyosin (ortholog); axon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: syntaxin-1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365432,909,560 - 2,918,175 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Stx1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365432,909,560 - 2,918,175 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl773,699,206 - 73,719,672 (-)EnsemblGRCh38hg38GRCh38
GRCh38773,699,210 - 73,719,673 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37773,113,535 - 73,134,032 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37773,113,540 - 73,133,999 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36772,751,476 - 72,771,924 (-)NCBINCBI36hg18NCBI36
Build 34772,558,190 - 72,578,613NCBI
Celera768,591,739 - 68,612,223 (-)NCBI
Cytogenetic Map7q11.23NCBI
HuRef768,995,950 - 69,016,432 (-)NCBIHuRef
CHM1_1773,259,272 - 73,279,754 (-)NCBICHM1_1
CRA_TCAGchr7v2772,446,607 - 72,467,089 (-)NCBI
Stx1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395135,051,473 - 135,079,954 (+)NCBIGRCm39mm39
GRCm385135,023,482 - 135,051,100 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5135,023,482 - 135,051,100 (+)EnsemblGRCm38mm10GRCm38
MGSCv375135,499,442 - 135,526,969 (+)NCBIGRCm37mm9NCBIm37
MGSCv365135,308,199 - 135,335,726 (+)NCBImm8
Celera5132,033,901 - 132,061,428 (+)NCBICelera
Cytogenetic Map5G2NCBI
Stx1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21221,641,971 - 21,670,022 (-)NCBI
Rnor_6.0 Ensembl1224,682,041 - 24,710,019 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01224,682,050 - 24,710,002 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01226,682,320 - 26,710,272 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41222,737,112 - 22,765,064 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1223,405,260 - 23,432,900 (-)NCBICelera
Cytogenetic Map12q12NCBI
Stx1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545614,030,226 - 14,046,456 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545614,030,233 - 14,046,456 (+)NCBIChiLan1.0ChiLan1.0
STX1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1780,852,495 - 80,871,635 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl780,852,495 - 80,862,255 (-)Ensemblpanpan1.1panPan2
STX1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl66,574,631 - 6,581,833 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.166,574,616 - 6,583,002 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
STX1A
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1289,347,495 - 9,367,948 (+)NCBI
ChlSab1.1 Ensembl289,347,532 - 9,368,585 (+)Ensembl
Stx1a
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474014,104,033 - 14,120,133 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005328525   ⟹   XP_005328582
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365432,909,560 - 2,918,173 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728588   ⟹   XP_021584263
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365432,911,285 - 2,918,175 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328582 (Get FASTA)   NCBI Sequence Viewer  
  XP_021584263 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005328582   ⟸   XM_005328525
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021584263   ⟸   XM_021728588
- Peptide Label: isoform X2
- Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009992 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000008965 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009994 ENTREZGENE, UniProtKB/TrEMBL
InterPro SNARE UniProtKB/TrEMBL
  STX1 UniProtKB/TrEMBL
  Syntaxin/epimorphin_CS UniProtKB/TrEMBL
  Syntaxin_N UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
NCBI Gene Stx1a ENTREZGENE
PANTHER PTHR19957:SF84 UniProtKB/TrEMBL
Pfam SNARE UniProtKB/TrEMBL
  Syntaxin UniProtKB/TrEMBL
PROSITE SYNTAXIN UniProtKB/TrEMBL
  T_SNARE UniProtKB/TrEMBL
SMART SynN UniProtKB/TrEMBL
  t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SSF47661 UniProtKB/TrEMBL
UniProt I3MEM0_ICTTR UniProtKB/TrEMBL