Btbd7 (BTB domain containing 7) - Rat Genome Database

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Gene: Btbd7 (BTB domain containing 7) Ictidomys tridecemlineatus
Analyze
Symbol: Btbd7
Name: BTB domain containing 7
RGD ID: 12730352
Description: INVOLVED IN regulation of branching involved in salivary gland morphogenesis (ortholog); ASSOCIATED WITH achondrogenesis type IA (ortholog); DICER1 syndrome (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BTB domain containing 7, transcript variant X1; BTB domain containing 7, transcript variant X2; BTB domain containing 7, transcript variant X3; BTB/POZ domain-containing protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864012,200,112 - 12,309,748 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367331,153,955 - 1,266,934 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367331,157,143 - 1,217,111 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Btbd7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864012,200,112 - 12,309,748 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367331,153,955 - 1,266,934 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367331,157,143 - 1,217,111 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BTBD7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381493,237,550 - 93,333,036 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1493,237,550 - 93,333,092 (-)EnsemblGRCh38hg38GRCh38
GRCh371493,703,896 - 93,799,382 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361492,773,649 - 92,869,138 (-)NCBINCBI36Build 36hg18NCBI36
Build 341492,823,726 - 92,869,138NCBI
Celera1473,757,920 - 73,853,399 (-)NCBICelera
Cytogenetic Map14q32.12NCBI
HuRef1473,884,190 - 73,979,391 (-)NCBIHuRef
CHM1_11493,641,911 - 93,737,412 (-)NCBICHM1_1
T2T-CHM13v2.01487,469,459 - 87,564,916 (-)NCBIT2T-CHM13v2.0
Btbd7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912102,747,056 - 102,844,733 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12102,747,056 - 102,844,730 (-)EnsemblGRCm39 Ensembl
GRCm3812102,780,797 - 102,878,471 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12102,780,797 - 102,878,471 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712104,022,858 - 104,116,616 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612103,185,698 - 103,279,456 (-)NCBIMGSCv36mm8
Celera12104,002,002 - 104,058,498 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1252.25NCBI
Btbd7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86127,685,185 - 127,774,947 (-)NCBIGRCr8
mRatBN7.26121,920,365 - 122,010,114 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6121,923,023 - 121,972,405 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6122,062,006 - 122,110,800 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06122,357,262 - 122,406,061 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06121,693,292 - 121,742,006 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06126,658,398 - 126,748,497 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6126,661,634 - 126,710,858 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06135,864,426 - 135,954,399 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46127,056,657 - 127,105,458 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16127,060,831 - 127,109,204 (-)NCBI
Celera6119,410,556 - 119,459,277 (-)NCBICelera
Cytogenetic Map6q32NCBI
Btbd7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543815,351,688 - 15,445,704 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543815,345,678 - 15,445,705 (-)NCBIChiLan1.0ChiLan1.0
BTBD7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21594,395,243 - 94,490,849 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11493,611,748 - 93,707,266 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01473,870,163 - 73,965,819 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11493,206,479 - 93,301,895 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1493,211,207 - 93,264,835 (-)Ensemblpanpan1.1panPan2
BTBD7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1862,437,825 - 62,547,419 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl862,441,752 - 62,522,836 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha862,014,795 - 62,124,540 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0862,708,795 - 62,818,504 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl862,712,265 - 62,794,000 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1862,387,479 - 62,496,950 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0862,438,869 - 62,548,499 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0862,768,363 - 62,877,830 (-)NCBIUU_Cfam_GSD_1.0
BTBD7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7114,617,508 - 114,707,095 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17114,617,489 - 114,707,056 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27121,202,700 - 121,292,271 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BTBD7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12470,979,273 - 71,084,485 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2470,979,232 - 71,041,628 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605358,230,859 - 58,335,941 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Btbd7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247349,665,086 - 9,714,685 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247349,659,249 - 9,768,359 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000007762   ⟹   ENSSTOP00000006949
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367331,153,955 - 1,266,934 (-)Ensembl
RefSeq Acc Id: XM_021735839   ⟹   XP_021591514
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864012,200,112 - 12,309,748 (+)NCBI
SpeTri2.0NW_0049367331,157,143 - 1,217,111 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021735840   ⟹   XP_021591515
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864012,200,112 - 12,260,014 (+)NCBI
SpeTri2.0NW_0049367331,205,256 - 1,217,111 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040273931   ⟹   XP_040129865
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864012,270,054 - 12,309,748 (+)NCBI
RefSeq Acc Id: XM_040273932   ⟹   XP_040129866
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864012,200,112 - 12,296,455 (+)NCBI
RefSeq Acc Id: XM_040273933   ⟹   XP_040129867
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864012,200,112 - 12,264,237 (+)NCBI
RefSeq Acc Id: XR_005728874
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864012,200,112 - 12,285,433 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021591514   ⟸   XM_021735839
- Peptide Label: isoform X1
- UniProtKB: I3MAD3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021591515   ⟸   XM_021735840
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_040129866   ⟸   XM_040273932
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040129867   ⟸   XM_040273933
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040129865   ⟸   XM_040273931
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000006949   ⟸   ENSSTOT00000007762
Protein Domains
BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007765 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000007762.3 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/TrEMBL
InterPro BACK UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  Btbd7 UniProtKB/TrEMBL
  BTBD7_BACK UniProtKB/TrEMBL
  BTBD7_BTB_POZ_first UniProtKB/TrEMBL
  BTBD7_BTB_POZ_second UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene Btbd7 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 7 UniProtKB/TrEMBL
  PTHR16064 UniProtKB/TrEMBL
Pfam BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
SMART BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
UniProt I3MAD3 ENTREZGENE, UniProtKB/TrEMBL