LOC101976290 (cytochrome b-c1 complex subunit 7) - Rat Genome Database

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Gene: LOC101976290 (cytochrome b-c1 complex subunit 7) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101976290 (Ensembl: UQCRB)
Name: cytochrome b-c1 complex subunit 7
RGD ID: 12729730
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN mitochondrial electron transport, ubiquinol to cytochrome c (inferred); ASSOCIATED WITH depressive disorder (ortholog); genetic disease (ortholog); inherited metabolic disorder (ortholog); FOUND IN mitochondrial respiratory chain complex III (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530338,874,448 - 38,883,247 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647046,300,613 - 46,305,016 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647046,300,547 - 46,305,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101976290
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530338,874,448 - 38,883,247 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647046,300,613 - 46,305,016 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647046,300,547 - 46,305,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UQCRB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38896,222,947 - 96,235,545 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl896,222,947 - 96,235,546 (-)EnsemblGRCh38hg38GRCh38
GRCh37897,235,175 - 97,247,773 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36897,311,910 - 97,316,987 (-)NCBINCBI36Build 36hg18NCBI36
Build 34897,311,910 - 97,316,987NCBI
Celera893,425,296 - 93,433,854 (-)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef892,444,462 - 92,453,413 (-)NCBIHuRef
CHM1_1897,279,143 - 97,288,101 (-)NCBICHM1_1
T2T-CHM13v2.0897,348,283 - 97,360,880 (-)NCBIT2T-CHM13v2.0
Uqcrb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391367,048,640 - 67,053,414 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1367,048,681 - 67,053,442 (-)EnsemblGRCm39 Ensembl
GRCm381366,900,576 - 66,905,350 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1366,900,617 - 66,905,378 (-)EnsemblGRCm38mm10GRCm38
MGSCv371367,001,557 - 67,006,286 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361367,336,370 - 67,341,099 (-)NCBIMGSCv36mm8
Celera1370,399,407 - 70,404,153 (+)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1334.54NCBI
Uqcrb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,700,016 - 65,705,382 (-)NCBIGRCr8
mRatBN7.2763,814,784 - 63,820,150 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,814,797 - 63,820,150 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,703,995 - 65,709,361 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,906,281 - 67,911,647 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,698,929 - 67,704,291 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0771,264,501 - 71,269,869 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl771,264,514 - 71,269,869 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl194,718,402 - 94,718,876 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0771,436,501 - 71,441,869 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,958,363 - 67,963,730 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,979,647 - 67,984,492 (-)NCBI
Celera760,947,446 - 60,952,812 (-)NCBICelera
Cytogenetic Map7q22NCBI
LOC102014666
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541712,229,317 - 12,232,944 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541712,225,505 - 12,232,944 (-)NCBIChiLan1.0ChiLan1.0
LOC100985683
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27113,563,347 - 113,568,015 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1889,102,298 - 89,106,936 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0892,856,055 - 92,860,697 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1895,053,173 - 95,058,311 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl895,053,170 - 95,058,311 (-)Ensemblpanpan1.1panPan2
LOC119866751
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.02940,934,060 - 40,939,720 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12940,977,344 - 40,982,559 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02940,946,437 - 40,951,665 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02941,409,574 - 41,414,443 (-)NCBIUU_Cfam_GSD_1.0
UQCRB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl440,403,109 - 40,409,057 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1440,403,272 - 40,409,080 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2443,631,687 - 43,645,603 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103237165
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1891,194,628 - 91,199,264 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl891,194,625 - 91,199,219 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603949,588,303 - 49,596,837 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101707358
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247633,550,959 - 3,555,346 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247633,550,916 - 3,555,430 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000008003   ⟹   ENSSTOP00000007163
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647046,300,613 - 46,305,016 (+)Ensembl
RefSeq Acc Id: XM_005316325   ⟹   XP_005316382
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530338,874,448 - 38,883,247 (+)NCBI
SpeTri2.0NW_00493647046,300,547 - 46,305,016 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040293840   ⟹   XP_040149774
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530338,874,596 - 38,883,247 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005316382 (Get FASTA)   NCBI Sequence Viewer  
  XP_040149774 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007163.1
GenBank Protein KAG3273868 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005316382   ⟸   XM_005316325
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040149774   ⟸   XM_040293840
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000007163   ⟸   ENSSTOT00000008003


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008017 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008003.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1090.10 UniProtKB/TrEMBL
InterPro QCR7 UniProtKB/TrEMBL
  QCR7_sf UniProtKB/TrEMBL
NCBI Gene LOC101976290 ENTREZGENE
PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT 7 UniProtKB/TrEMBL
  PTHR12022 UniProtKB/TrEMBL
Pfam UCR_14kD UniProtKB/TrEMBL
PIRSF Bc1_14K UniProtKB/TrEMBL
Superfamily-SCOP SSF81524 UniProtKB/TrEMBL
UniProt I3MAU2_ICTTR UniProtKB/TrEMBL