Loxl4 (lysyl oxidase like 4) - Rat Genome Database

Name: Loxl4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Loxl4 (lysyl oxidase like 4) Ictidomys tridecemlineatus

Analyze

Symbol:

Loxl4

Name:

lysyl oxidase like 4

RGD ID:

12729132

Description:

ENCODES a protein that exhibits copper ion binding (inferred); metal ion binding (inferred); oxidoreductase activity (inferred); INVOLVED IN collagen fibril organization (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); urinary bladder cancer (ortholog); FOUND IN collagen-containing extracellular matrix (inferred); extracellular region (inferred); extracellular space (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

lysyl oxidase homolog 4; lysyl oxidase like 4, transcript variant X1; lysyl oxidase like 4, transcript variant X2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LOXL4 (lysyl oxidase like 4)	NCBI	Ortholog
Mus musculus (house mouse):	Loxl4 (lysyl oxidase-like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Loxl4 (lysyl oxidase-like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Loxl4 (lysyl oxidase like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOXL4 (lysyl oxidase like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOXL4 (lysyl oxidase like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LOXL4 (lysyl oxidase like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LOXL4 (lysyl oxidase like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Loxl4 (lysyl oxidase like 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	35,517,218 - 35,536,391 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936636	1,556,328 - 1,574,825 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936636	1,556,334 - 1,575,512 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

genetic disease (ISO)

urinary bladder cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

collagen fibril organization (IEA)

Cellular Component

collagen-containing extracellular matrix (IEA)

extracellular region (IEA)

extracellular space (IEA)

membrane (IEA)

receptor complex (IEA)

Molecular Function

copper ion binding (IEA)

metal ion binding (IEA)

oxidoreductase activity (IEA)

oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor (IEA)

protein binding (ISO)

protein-lysine 6-oxidase activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Loxl4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	35,517,218 - 35,536,391 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936636	1,556,328 - 1,574,825 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936636	1,556,334 - 1,575,512 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOXL4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	98,247,690 - 98,268,194 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	98,247,690 - 98,268,194 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	100,007,447 - 100,027,951 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	99,997,433 - 100,017,997 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	99,997,439 - 100,017,997	NCBI
Celera	10	93,744,493 - 93,764,723 (-)	NCBI		Celera
Cytogenetic Map	10	q24.2	NCBI
HuRef	10	93,632,770 - 93,648,141 (-)	ENTREZGENE		HuRef
CHM1_1	10	100,289,387 - 100,309,952 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	99,128,069 - 99,148,240 (-)	NCBI		T2T-CHM13v2.0

Loxl4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	42,580,718 - 42,601,326 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	42,582,421 - 42,601,252 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	42,592,279 - 42,612,806 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	42,593,982 - 42,612,813 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	42,666,769 - 42,687,296 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	42,647,293 - 42,666,059 (-)	NCBI		MGSCv36	mm8
Celera	19	43,384,388 - 43,404,805 (-)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	36.56	NCBI

Loxl4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	251,345,445 - 251,365,640 (-)	NCBI		GRCr8
mRatBN7.2	1	241,396,183 - 241,416,385 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	241,397,983 - 241,416,322 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	249,543,936 - 249,562,277 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	256,241,080 - 256,259,421 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	248,894,079 - 248,912,420 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	261,833,365 - 261,853,599 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	261,835,992 - 261,853,495 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	269,284,875 - 269,305,039 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	248,269,249 - 248,287,588 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	248,384,909 - 248,401,985 (+)	NCBI
Celera	1	237,230,416 - 237,248,737 (-)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

Loxl4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955507	4,231,792 - 4,256,227 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955507	4,229,284 - 4,260,005 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOXL4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	110,152,740 - 110,173,846 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	110,155,414 - 110,178,627 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	94,861,187 - 94,881,784 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	98,357,322 - 98,372,691 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	98,357,322 - 98,372,691 (-)	Ensembl	panpan1.1		panPan2

LOXL4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	11,399,465 - 11,419,562 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	11,400,446 - 11,419,559 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	11,582,903 - 11,602,994 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	11,724,687 - 11,744,779 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	11,724,687 - 11,740,336 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	11,408,478 - 11,428,556 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	11,446,850 - 11,466,940 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	11,586,563 - 11,606,651 (-)	NCBI		UU_Cfam_GSD_1.0

LOXL4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	109,571,947 - 109,589,160 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	109,571,942 - 109,593,408 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	118,983,478 - 119,005,160 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOXL4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	91,405,977 - 91,426,197 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	91,407,095 - 91,420,938 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	52,308,529 - 52,328,833 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Loxl4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	9,835,932 - 9,854,588 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	9,834,297 - 9,854,654 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005335246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005335247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000029135 ⟹ ENSSTOP00000017900

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936636	1,556,328 - 1,574,299 (+)	Ensembl

RefSeq Acc Id:

ENSSTOT00000036978 ⟹ ENSSTOP00000032486

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936636	1,559,119 - 1,574,825 (+)	Ensembl

RefSeq Acc Id:

XM_005335246 ⟹ XP_005335303

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	35,517,218 - 35,535,244 (+)	NCBI
SpeTri2.0	NW_004936636	1,556,334 - 1,575,512 (+)	NCBI

Sequence:

show sequence

CGCCTGGCCCAGCCCAGCCCCTGACCGTCTTCGATCCAGCTGGTACCCTGACGTCACCAGGATG
TGGTCCCCACCAGCCACCATATCCCTGTTTCTGCTGTTGCTGCTGTTAGGCCAGACCCCTCCCT
GCAGGCCACAGTCACTGGGCACCAAGAAGCTCCGGCTGGTGGGCCCAGGGAGCAGGCCAGAGGA
GGGCCGCCTGGAGGTGCTGCACCAGGGCCAGTGGGGCACCGTGTGTGACGATGACTTTGCGCTT
CAGGAGGCCACAGTGGCCTGCCGCCAGCTGGGCTTTGAGTCTGCCTTGACCTGGGCCCACAGTG
CCAAATATGGCCAAGGGGAGGGCCCGATCTGGCTGGACAATGTGCGCTGTATGGGAACTGAGAA
CTCCCTGGACCAGTGTGCATCTAATGGCTGGGGTGTCAGTGACTGCAGCCATTCAGAAGATGTC
GGGGTGGTATGCCACCCCCAGCGCCAGAGAGGCTACTTCTCTGAGAGGGTCTCCAATGCCCTTG
GGCCCCAGGGCCAGCGGCTGGAGGAGGTGCGGCTCAAGCCCATCCTCGCTAGTGCCAAGAGGCA
CAGCCCGGTGACTGAGGGAGCCGTGGAAGTACGGTACGAGGGCCACTGGCGGCAGGTGTGTGAC
CAGAGCTGGACCATGAACAACAGCAGGGTGGTGTGTGGTATGCTGGGCTTCCCCAGCCAGGTGC
CTGTCAACAGCCTCTATTACAGAAAAATCTGGAATCTGAAGATGAAGGATCCCAAGTCTAGGCT
GAAGGGCCTGACCAGTAAGAATTCCTTCTGGATCCACCGGGTTGACTGCCTGGGGACAGAGCCC
CACCTGGCCAACTGCCAGGTGCAGGTGGCCCCACGACGAGGCAAGCTGCAGCCGGCCTGTCCAG
GTGGCATGCACGCGGTGGTCAGCTGTGTGGCGGGGCCCCGTTTTCGATCGCCCAAGGTGAAGCC
CTGGCGCAAGGAGTCCCGGGCAGAGGAGCTGAAGGTGCGCCTGCGCTCTGGGGCCCAGGTGGGC
GAGGGCCGGGTGGAGGTGCTGGTGAACCGGCAATGGGGCACAGTCTGTGACCACAGGTGGAACC
TCATCTCTGCCAGCGTTTTATGTCGTCAGCTTGGCTTTGGCTCTGCACGGGAGGCCCTCTTTGG
GGCCCAGCTGGGCCAAGGATTGGGGCCCATCCACCTTAGTGAGGTGCACTGCAGGGGATATGAG
CAGACCCTCAGTGACTGCCTCGCCCTGGAAGGGTCCCAGAATGGCTGTCAACATGAGAATGATG
CTGCCGTCAGGTGTAACATCCCTGACATGGGCTTCCAGAATCAGGTGCGCTTGGCAGGTGGACG
AAGCGCAGAAGAGGGCGTGGTGGAGGTGCAGGTGGAGGTGAATGGTGTCCTACGTTGGGGCACC
GTGTGCAGTGATCACTGGGGTCTCACTGAAGCCATGGTGGCCTGCCGACAGCTTGGCCTGGGTT
TTGCCAACTTTGCTATCAAGGACACATGGTACTGGCAGGGGACGCCTGAAGCCAGAGAAGTGGT
CATGAGTGGAGTGCGCTGCTCAGGCACAGAGCTGGCCCTGCAGCAGTGTCAGAAGCATGGGCCT
GTGCACTGCTCCCACGGCACTGGGCGCTTCTCAGCTGGAGTCTCCTGCACAAACAGTGCTCCAG
ACCTAGTGATGAATGCTCAGCTGGTGCAGGAGACAGCCTACCTGGAGGACCGCCCACTCAGCCT
GCTATACTGTGCCCATGAGGAGAACTGCCTCTCACAGTCAGCCGACCACATGGACTGGCCATAT
GGACACCGGCGCCTGTTGCGCTTCTCCTCACAGATCTACAACCTAGGCAGGGCTGACTTTCGTC
CCAAGACTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAGGCATTACCACAGCATCGAGGT
CTTCACCCACTATGACCTACTTACACTCAATGGCTCCAAGGTGGCTGAGGGGCACAAGGCCAGC
TTCTGTCTAGAAGACACAAACTGCCCCACAGGACTTCAGCGGCGCTATGCATGTGCCAACTTTG
GGGAACAGGGAGTGACTGTAGGCTGCTGGGACACTTACCGGCATGACATTGATTGCCAATGGGT
GGATATCACAGATGTGGGACCAGGGGACTATATCTTCCAGGTGGTTGTGAACCCCACAAATGAG
GTGGCGGAGTCAGACTTCTCCAACAACATGATGCGCTGCCGCTGCAAGTATGACGGGCAGAGGG
TCTGGCTGCACAACTGCCACACAGGAGATTCATACAGAGCCAATGCAGAGCTTTCCCTGGAACA
GGAACAGCGACTTAGGAACAACCTCATCTGAAGTCATCACTGCACACTCCCAACTGCTGCCCAC
ACACGTCAAATACCTCAGCTTATTGGAGCCATGCCCTTCACAGAGCTCTGACCTATAAGGAAAG
GGGCCCAGTGTCAAGGGGCACCAAGAACTTGCTCAGGAAACATTTTGATGGCAAGATCACCAAA
CCAGGACGGTATCGCTCCCTCAGGATGGTTCTGGGTCTGTCTCCTGTGGCATACATAATAGGAC
CTCCAGGCTTTGGTCATCTAAGCTCCTCTTCATAAGGAGACCCAATCTTTACTGAAATTTGCCA
CAGGGTTCCTGGATTCAGAAACTCTCAGTTTCTTAGGGGTGAACTATGGCCCAGACCTCCGCAT
AAACAGTGCTTTGTAAATGTCCTCAAAGAGCAGAAGACAGAGGACCAAAATATGCAAGAAGTGG
GATTAGTTCTCTGCTAGAAGCTCAATGCAACATAACTGTCAAAATCACAACTTGCAGAGAAGTT
GGTGAATGCAGTCCCTTGCTTTATCTGTCCTTATTTAGAACTTGCCTCTCACATCTGCTCCTTA
GTGTGTTACCTTTATCTTATTGCATATAAGGCTGTTTGTAAAACTCCTGCAATCTCAGGCCTCA
GGCATCCCATTATCTACTGATGGGTCAACATCACCAATTATTGAGTATTTGAGAAAAGACAAGT
TTCACAGAAGAGCCCAGATGGGGCCTTCCTGCAGAACAGCAAGAGAAGATCAAAGAAAGACTGC
TAAAGTATATGGACCCCAGTCTCTATCAGGGTCTCTGCCAAGGAGAGGAATGTGTCTTACACTT
GGCAGACAATCCATTTTCTCTCAGGATCACCATGCATCTCAGGATTGGCCTAAATTTAAGGTCT
CAACCAAGTCAACTTTGCATCAAATACATTTTTGTAATGAAAAGAAAAGTCAAGCCACTCTCTA
TAGAAACATGAAGATAGGTCTGGTAGGGTAAGGGACACAAGAATGGAGAAATCAGAAAGGGAAT
CATTTAATTTAGTGAAGGACCAAACCTGGGAAAGGCCACCATCCCTGCTTGATGTGGCTCCAGT
ATGCTGTTGCTCAGGTGGTATAAAAATACCAAGGTCTTCTTGGACATGATTCTTCATCTTTTCT
CCACTGACACACACTTAAAAGAGATGATCTTTATAGTTCTGACACTCCTAATGCCAATAAAGGT
TGCTCATTGTGGACTGCTCCAAAGACCA

hide sequence

RefSeq Acc Id:

XM_005335247 ⟹ XP_005335304

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	35,517,218 - 35,536,391 (+)	NCBI
SpeTri2.0	NW_004936636	1,556,334 - 1,575,512 (+)	NCBI

Sequence:

show sequence

CGCCTGGCCCAGCCCAGCCCCTGACCGTCTTCGATCCAGCTGGTACCCTGACGTCACCAGGATG
TGGTCCCCACCAGCCACCATATCCCTGTTTCTGCTGTTGCTGCTGTTAGGCCAGACCCCTCCCT
GCAGGCCACAGTCACTGGGCACCAAGAAGCTCCGGCTGGTGGGCCCAGGGAGCAGGCCAGAGGA
GGGCCGCCTGGAGGTGCTGCACCAGGGCCAGTGGGGCACCGTGTGTGACGATGACTTTGCGCTT
CAGGAGGCCACAGTGGCCTGCCGCCAGCTGGGCTTTGAGTCTGCCTTGACCTGGGCCCACAGTG
CCAAATATGGCCAAGGGGAGGGCCCGATCTGGCTGGACAATGTGCGCTGTATGGGAACTGAGAA
CTCCCTGGACCAGTGTGCATCTAATGGCTGGGGTGTCAGTGACTGCAGCCATTCAGAAGATGTC
GGGGTGGTATGCCACCCCCAGCGCCAGAGAGGCTACTTCTCTGAGAGGGTCTCCAATGCCCTTG
GGCCCCAGGGCCAGCGGCTGGAGGAGGTGCGGCTCAAGCCCATCCTCGCTAGTGCCAAGAGGCA
CAGCCCGGTGACTGAGGGAGCCGTGGAAGTACGGTACGAGGGCCACTGGCGGCAGGTGTGTGAC
CAGAGCTGGACCATGAACAACAGCAGGGTGGTGTGTGGTATGCTGGGCTTCCCCAGCCAGGTGC
CTGTCAACAGCCTCTATTACAGAAAAATCTGGAATCTGAAGATGAAGGATCCCAAGTCTAGGCT
GAAGGGCCTGACCAGTAAGAATTCCTTCTGGATCCACCGGGTTGACTGCCTGGGGACAGAGCCC
CACCTGGCCAACTGCCAGGTGCAGGTGGCCCCACGACGAGGCAAGCTGCAGCCGGCCTGTCCAG
GTGGCATGCACGCGGTGGTCAGCTGTGTGGCGGGGCCCCGTTTTCGATCGCCCAAGGTGAAGCC
CTGGCGCAAGGAGTCCCGGGCAGAGCAGGAGCTGAAGGTGCGCCTGCGCTCTGGGGCCCAGGTG
GGCGAGGGCCGGGTGGAGGTGCTGGTGAACCGGCAATGGGGCACAGTCTGTGACCACAGGTGGA
ACCTCATCTCTGCCAGCGTTTTATGTCGTCAGCTTGGCTTTGGCTCTGCACGGGAGGCCCTCTT
TGGGGCCCAGCTGGGCCAAGGATTGGGGCCCATCCACCTTAGTGAGGTGCACTGCAGGGGATAT
GAGCAGACCCTCAGTGACTGCCTCGCCCTGGAAGGGTCCCAGAATGGCTGTCAACATGAGAATG
ATGCTGCCGTCAGGTGTAACATCCCTGACATGGGCTTCCAGAATCAGGTGCGCTTGGCAGGTGG
ACGAAGCGCAGAAGAGGGCGTGGTGGAGGTGCAGGTGGAGGTGAATGGTGTCCTACGTTGGGGC
ACCGTGTGCAGTGATCACTGGGGTCTCACTGAAGCCATGGTGGCCTGCCGACAGCTTGGCCTGG
GTTTTGCCAACTTTGCTATCAAGGACACATGGTACTGGCAGGGGACGCCTGAAGCCAGAGAAGT
GGTCATGAGTGGAGTGCGCTGCTCAGGCACAGAGCTGGCCCTGCAGCAGTGTCAGAAGCATGGG
CCTGTGCACTGCTCCCACGGCACTGGGCGCTTCTCAGCTGGAGTCTCCTGCACAAACAGTGCTC
CAGACCTAGTGATGAATGCTCAGCTGGTGCAGGAGACAGCCTACCTGGAGGACCGCCCACTCAG
CCTGCTATACTGTGCCCATGAGGAGAACTGCCTCTCACAGTCAGCCGACCACATGGACTGGCCA
TATGGACACCGGCGCCTGTTGCGCTTCTCCTCACAGATCTACAACCTAGGCAGGGCTGACTTTC
GTCCCAAGACTGGACGCCACAGCTGGATTTGGCACCAGTGCCACAGGCATTACCACAGCATCGA
GGTCTTCACCCACTATGACCTACTTACACTCAATGGCTCCAAGGTGGCTGAGGGGCACAAGGCC
AGCTTCTGTCTAGAAGACACAAACTGCCCCACAGGACTTCAGCGGCGCTATGCATGTGCCAACT
TTGGGGAACAGGGAGTGACTGTAGGCTGCTGGGACACTTACCGGCATGACATTGATTGCCAATG
GGTGGATATCACAGATGTGGGACCAGGGGACTATATCTTCCAGGTGGTTGTGAACCCCACAAAT
GAGGTGGCGGAGTCAGACTTCTCCAACAACATGATGCGCTGCCGCTGCAAGTATGACGGGCAGA
GGGTCTGGCTGCACAACTGCCACACAGGAGATTCATACAGAGCCAATGCAGAGCTTTCCCTGGA
ACAGGAACAGCGACTTAGGAACAACCTCATCTGAAGTCATCACTGCACACTCCCAACTGCTGCC
CACACACGTCAAATACCTCAGCTTATTGGAGCCATGCCCTTCACAGAGCTCTGACCTATAAGGA
AAGGGGCCCAGTGTCAAGGGGCACCAAGAACTTGCTCAGGAAACATTTTGATGGCAAGATCACC
AAACCAGGACGGTATCGCTCCCTCAGGATGGTTCTGGGTCTGTCTCCTGTGGCATACATAATAG
GACCTCCAGGCTTTGGTCATCTAAGCTCCTCTTCATAAGGAGACCCAATCTTTACTGAAATTTG
CCACAGGGTTCCTGGATTCAGAAACTCTCAGTTTCTTAGGGGTGAACTATGGCCCAGACCTCCG
CATAAACAGTGCTTTGTAAATGTCCTCAAAGAGCAGAAGACAGAGGACCAAAATATGCAAGAAG
TGGGATTAGTTCTCTGCTAGAAGCTCAATGCAACATAACTGTCAAAATCACAACTTGCAGAGAA
GTTGGTGAATGCAGTCCCTTGCTTTATCTGTCCTTATTTAGAACTTGCCTCTCACATCTGCTCC
TTAGTGTGTTACCTTTATCTTATTGCATATAAGGCTGTTTGTAAAACTCCTGCAATCTCAGGCC
TCAGGCATCCCATTATCTACTGATGGGTCAACATCACCAATTATTGAGTATTTGAGAAAAGACA
AGTTTCACAGAAGAGCCCAGATGGGGCCTTCCTGCAGAACAGCAAGAGAAGATCAAAGAAAGAC
TGCTAAAGTATATGGACCCCAGTCTCTATCAGGGTCTCTGCCAAGGAGAGGAATGTGTCTTACA
CTTGGCAGACAATCCATTTTCTCTCAGGATCACCATGCATCTCAGGATTGGCCTAAATTTAAGG
TCTCAACCAAGTCAACTTTGCATCAAATACATTTTTGTAATGAAAAGAAAAGTCAAGCCACTCT
CTATAGAAACATGAAGATAGGTCTGGTAGGGTAAGGGACACAAGAATGGAGAAATCAGAAAGGG
AATCATTTAATTTAGTGAAGGACCAAACCTGGGAAAGGCCACCATCCCTGCTTGATGTGGCTCC
AGTATGCTGTTGCTCAGGTGGTATAAAAATACCAAGGTCTTCTTGGACATGATTCTTCATCTTT
TCTCCACTGACACACACTTAAAAGAGATGATCTTTATAGTTCTGACACTCCTAATGCCAATAAA
GGTTGCTCATTGTGGACTGCTCCAAAGACCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005335303	(Get FASTA)	NCBI Sequence Viewer
	XP_005335304	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000017900.2
	ENSSTOP00000032486.1
GenBank Protein	KAG3264323	(Get FASTA)	NCBI Sequence Viewer
	KAG3264324	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005335303 ⟸ XM_005335246
- Peptide Label:	isoform X2
- UniProtKB:	I3N0K4 (UniProtKB/TrEMBL), A0A287DFZ1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWSPPATISLFLLLLLLGQTPPCRPQSLGTKKLRLVGPGSRPEEGRLEVLHQGQWGTVCDDDFA LQEATVACRQLGFESALTWAHSAKYGQGEGPIWLDNVRCMGTENSLDQCASNGWGVSDCSHSED VGVVCHPQRQRGYFSERVSNALGPQGQRLEEVRLKPILASAKRHSPVTEGAVEVRYEGHWRQVC DQSWTMNNSRVVCGMLGFPSQVPVNSLYYRKIWNLKMKDPKSRLKGLTSKNSFWIHRVDCLGTE PHLANCQVQVAPRRGKLQPACPGGMHAVVSCVAGPRFRSPKVKPWRKESRAEELKVRLRSGAQV GEGRVEVLVNRQWGTVCDHRWNLISASVLCRQLGFGSAREALFGAQLGQGLGPIHLSEVHCRGY EQTLSDCLALEGSQNGCQHENDAAVRCNIPDMGFQNQVRLAGGRSAEEGVVEVQVEVNGVLRWG TVCSDHWGLTEAMVACRQLGLGFANFAIKDTWYWQGTPEAREVVMSGVRCSGTELALQQCQKHG PVHCSHGTGRFSAGVSCTNSAPDLVMNAQLVQETAYLEDRPLSLLYCAHEENCLSQSADHMDWP YGHRRLLRFSSQIYNLGRADFRPKTGRHSWIWHQCHRHYHSIEVFTHYDLLTLNGSKVAEGHKA SFCLEDTNCPTGLQRRYACANFGEQGVTVGCWDTYRHDIDCQWVDITDVGPGDYIFQVVVNPTN EVAESDFSNNMMRCRCKYDGQRVWLHNCHTGDSYRANAELSLEQEQRLRNNLI hide sequence

RefSeq Acc Id:	XP_005335304 ⟸ XM_005335247
- Peptide Label:	isoform X1
- UniProtKB:	A0A287DFZ1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWSPPATISLFLLLLLLGQTPPCRPQSLGTKKLRLVGPGSRPEEGRLEVLHQGQWGTVCDDDFA LQEATVACRQLGFESALTWAHSAKYGQGEGPIWLDNVRCMGTENSLDQCASNGWGVSDCSHSED VGVVCHPQRQRGYFSERVSNALGPQGQRLEEVRLKPILASAKRHSPVTEGAVEVRYEGHWRQVC DQSWTMNNSRVVCGMLGFPSQVPVNSLYYRKIWNLKMKDPKSRLKGLTSKNSFWIHRVDCLGTE PHLANCQVQVAPRRGKLQPACPGGMHAVVSCVAGPRFRSPKVKPWRKESRAEQELKVRLRSGAQ VGEGRVEVLVNRQWGTVCDHRWNLISASVLCRQLGFGSAREALFGAQLGQGLGPIHLSEVHCRG YEQTLSDCLALEGSQNGCQHENDAAVRCNIPDMGFQNQVRLAGGRSAEEGVVEVQVEVNGVLRW GTVCSDHWGLTEAMVACRQLGLGFANFAIKDTWYWQGTPEAREVVMSGVRCSGTELALQQCQKH GPVHCSHGTGRFSAGVSCTNSAPDLVMNAQLVQETAYLEDRPLSLLYCAHEENCLSQSADHMDW PYGHRRLLRFSSQIYNLGRADFRPKTGRHSWIWHQCHRHYHSIEVFTHYDLLTLNGSKVAEGHK ASFCLEDTNCPTGLQRRYACANFGEQGVTVGCWDTYRHDIDCQWVDITDVGPGDYIFQVVVNPT NEVAESDFSNNMMRCRCKYDGQRVWLHNCHTGDSYRANAELSLEQEQRLRNNLI hide sequence

RefSeq Acc Id:

ENSSTOP00000017900 ⟸ ENSSTOT00000029135

RefSeq Acc Id:

ENSSTOP00000032486 ⟸ ENSSTOT00000036978

Protein Domains

SRCR

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000026677	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000029135.2	UniProtKB/TrEMBL
	ENSSTOT00000036978.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.250.10	UniProtKB/TrEMBL
InterPro	Lysyl_oxidase	UniProtKB/TrEMBL
	Lysyl_oxidase_CS	UniProtKB/TrEMBL
	SRCR	UniProtKB/TrEMBL
	SRCR-like_dom	UniProtKB/TrEMBL
	SRCR-like_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Loxl4	ENTREZGENE
PANTHER	LYSYL OXIDASE HOMOLOG 4	UniProtKB/TrEMBL
	LYSYL OXIDASE-LIKE-RELATED	UniProtKB/TrEMBL
Pfam	Lysyl_oxidase	UniProtKB/TrEMBL
	SRCR	UniProtKB/TrEMBL
PRINTS	LYSYLOXIDASE	UniProtKB/TrEMBL
	SPERACTRCPTR	UniProtKB/TrEMBL
PROSITE	LYSYL_OXIDASE	UniProtKB/TrEMBL
	SRCR_1	UniProtKB/TrEMBL
	SRCR_2	UniProtKB/TrEMBL
SMART	SM00202	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56487	UniProtKB/TrEMBL
UniProt	A0A287DFZ1	ENTREZGENE, UniProtKB/TrEMBL
	I3N0K4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD