Bach2 (BTB domain and CNC homolog 2) - Rat Genome Database

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Gene: Bach2 (BTB domain and CNC homolog 2) Ictidomys tridecemlineatus
Analyze
Symbol: Bach2
Name: BTB domain and CNC homolog 2
RGD ID: 12729067
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); celiac disease (ortholog); Crohn's disease (ortholog); FOUND IN RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription regulator protein BACH2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494684,094,552 - 84,429,900 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365102,299,831 - 2,371,544 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365102,041,004 - 2,375,215 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Bach2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494684,094,552 - 84,429,900 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365102,299,831 - 2,371,544 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365102,041,004 - 2,375,215 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BACH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38689,926,528 - 90,296,843 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl689,926,528 - 90,296,843 (-)EnsemblGRCh38hg38GRCh38
GRCh37690,636,247 - 91,006,562 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36690,692,969 - 91,063,182 (-)NCBINCBI36Build 36hg18NCBI36
Build 34690,692,968 - 91,063,182NCBI
Celera691,056,791 - 91,427,144 (-)NCBICelera
Cytogenetic Map6q15NCBI
HuRef687,855,580 - 88,225,476 (-)NCBIHuRef
CHM1_1690,733,911 - 91,104,124 (-)NCBICHM1_1
T2T-CHM13v2.0691,138,217 - 91,508,429 (-)NCBIT2T-CHM13v2.0
Bach2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39432,238,413 - 32,586,109 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl432,238,804 - 32,586,108 (+)EnsemblGRCm39 Ensembl
GRCm38432,238,413 - 32,586,109 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl432,238,804 - 32,586,108 (+)EnsemblGRCm38mm10GRCm38
MGSCv37432,504,410 - 32,673,083 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36432,567,563 - 32,909,812 (+)NCBIMGSCv36mm8
Celera432,164,289 - 32,333,354 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map414.02NCBI
Bach2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8551,428,802 - 51,779,030 (+)NCBIGRCr8
mRatBN7.2546,632,338 - 46,982,676 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl546,638,317 - 46,977,877 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx548,859,726 - 49,119,822 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0550,458,890 - 50,718,988 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0550,402,412 - 50,664,315 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0547,458,891 - 47,807,176 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl547,546,014 - 47,807,166 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0552,073,295 - 52,410,910 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4548,611,805 - 48,881,943 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera545,479,904 - 45,738,863 (+)NCBICelera
Cytogenetic Map5q21NCBI
Bach2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541116,613,397 - 16,877,834 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541116,607,546 - 16,947,359 (-)NCBIChiLan1.0ChiLan1.0
BACH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25110,011,721 - 110,381,491 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16107,912,858 - 108,282,578 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0687,806,188 - 88,175,840 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1691,081,381 - 91,212,497 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl691,083,533 - 91,160,552 (-)Ensemblpanpan1.1panPan2
BACH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11249,101,621 - 49,375,415 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1249,106,523 - 49,460,286 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1248,908,403 - 49,267,597 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01249,910,921 - 50,270,587 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1249,916,822 - 50,270,719 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11249,225,818 - 49,503,613 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01249,126,581 - 49,485,448 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01249,318,946 - 49,677,611 (-)NCBIUU_Cfam_GSD_1.0
BACH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl157,899,808 - 58,281,430 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1157,881,203 - 58,281,740 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2164,904,041 - 65,200,342 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BACH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11314,681,323 - 15,049,690 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1314,687,188 - 14,763,706 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040191,077,385 - 191,445,395 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bach2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247993,984,546 - 4,256,898 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247993,893,548 - 4,262,344 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000005118   ⟹   ENSSTOP00000004594
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365102,299,831 - 2,371,544 (+)Ensembl
RefSeq Acc Id: XM_005324699   ⟹   XP_005324756
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494684,094,552 - 84,429,900 (-)NCBI
SpeTri2.0NW_0049365102,041,004 - 2,375,215 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040283105   ⟹   XP_040139039
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494684,094,552 - 84,361,761 (-)NCBI
RefSeq Acc Id: XM_040283106   ⟹   XP_040139040
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494684,094,552 - 84,429,900 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005324756 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139039 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139040 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004594.3
GenBank Protein KAG3289939 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005324756   ⟸   XM_005324699
- Peptide Label: isoform X3
- UniProtKB: I3M5I1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040139040   ⟸   XM_040283106
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040139039   ⟸   XM_040283105
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000004594   ⟸   ENSSTOT00000005118
Protein Domains
BTB   bZIP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005129 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005118.3 UniProtKB/TrEMBL
Gene3D-CATH Transcription factor, Skn-1-like, DNA-binding domain UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  bZIP UniProtKB/TrEMBL
  bZIP_BACH UniProtKB/TrEMBL
  bZIP_Maf UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  TF_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene Bach2 ENTREZGENE
PANTHER AGAP004733-PA UniProtKB/TrEMBL
  TRANSCRIPTION REGULATOR PROTEIN BACH2 UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  bZIP_Maf UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  BZIP UniProtKB/TrEMBL
  BZIP_BASIC UniProtKB/TrEMBL
SMART BRLZ UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF47454 UniProtKB/TrEMBL
  SSF54695 UniProtKB/TrEMBL
  SSF57959 UniProtKB/TrEMBL
UniProt I3M5I1 ENTREZGENE, UniProtKB/TrEMBL