Flot1 (flotillin 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Flot1 (flotillin 1) Ictidomys tridecemlineatus
Analyze
Symbol: Flot1
Name: flotillin 1
RGD ID: 12728439
Description: ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); INVOLVED IN axonogenesis (ortholog); plasma membrane raft organization (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH genetic disease (ortholog); megacolon (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); caveola (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: flotillin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494634,021,923 - 34,035,815 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837380,288 - 401,071 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936837387,012 - 401,076 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Flot1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494634,021,923 - 34,035,815 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837380,288 - 401,071 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936837387,012 - 401,076 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FLOT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,727,709 - 30,742,687 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,727,709 - 30,742,732 (-)EnsemblGRCh38hg38GRCh38
GRCh37630,695,486 - 30,710,464 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,803,490 - 30,818,432 (-)NCBINCBI36Build 36hg18NCBI36
Build 34630,803,491 - 30,818,432NCBI
Celera632,293,643 - 32,308,593 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,495,459 - 30,510,242 (-)NCBIHuRef
CHM1_1630,697,639 - 30,712,561 (-)NCBICHM1_1
T2T-CHM13v2.0630,591,911 - 30,606,890 (-)NCBIT2T-CHM13v2.0
Flot1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,134,243 - 36,143,674 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1736,134,122 - 36,143,683 (+)EnsemblGRCm39 Ensembl
GRCm381735,823,320 - 35,832,789 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,823,230 - 35,832,791 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,960,302 - 35,969,732 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,431,410 - 35,440,840 (+)NCBIMGSCv36mm8
Celera1739,333,424 - 39,342,847 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.7NCBI
Flot1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8202,922,662 - 2,932,906 (-)NCBIGRCr8
mRatBN7.2202,917,864 - 2,927,993 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl202,917,137 - 2,927,978 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx202,969,295 - 2,979,369 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0202,974,276 - 2,984,354 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0203,000,638 - 3,010,732 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,427,890 - 3,438,418 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,427,880 - 3,438,396 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,524,708 - 5,535,232 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,065,792 - 3,076,166 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,066,008 - 3,169,167 (-)NCBI
Celera20343,778 - 353,887 (-)NCBICelera
Cytogenetic Map20p12NCBI
Flot1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583713,560 - 729,924 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955583717,246 - 729,924 (-)NCBIChiLan1.0ChiLan1.0
FLOT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,288,663 - 45,303,454 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,251,507 - 41,266,371 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,472,839 - 30,487,809 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,342,026 - 31,357,505 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,342,033 - 31,357,559 (-)Ensemblpanpan1.1panPan2
FLOT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112517,941 - 528,677 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12516,032 - 528,637 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12655,207 - 665,931 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012661,078 - 671,802 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12656,880 - 671,882 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112519,006 - 529,724 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012587,853 - 598,598 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012656,440 - 667,178 (-)NCBIUU_Cfam_GSD_1.0
FLOT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,253,162 - 23,265,106 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,253,157 - 23,265,165 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2726,975,124 - 26,987,109 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FLOT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,714,354 - 41,725,820 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,714,402 - 41,725,397 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604430,425,408 - 30,437,271 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Flot1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,992,929 - 25,003,759 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,992,961 - 25,000,463 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005341044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000002903   ⟹   ENSSTOP00000002596
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936837387,462 - 400,583 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000041298   ⟹   ENSSTOP00000025448
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936837380,288 - 400,597 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000042846   ⟹   ENSSTOP00000024105
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936837386,979 - 401,071 (-)Ensembl
RefSeq Acc Id: XM_005341044   ⟹   XP_005341101
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494634,021,923 - 34,035,815 (-)NCBI
SpeTri2.0NW_004936837387,012 - 401,076 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005341101 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002596.3
  ENSSTOP00000024105.1
  ENSSTOP00000025448.1
GenBank Protein KAG3289013 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005341101   ⟸   XM_005341044
- UniProtKB: A0A287CRZ8 (UniProtKB/TrEMBL),   A0A287CVZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000002596   ⟸   ENSSTOT00000002903
RefSeq Acc Id: ENSSTOP00000025448   ⟸   ENSSTOT00000041298
RefSeq Acc Id: ENSSTOP00000024105   ⟸   ENSSTOT00000042846
Protein Domains
Band


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002900 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002903.3 UniProtKB/TrEMBL
  ENSSTOT00000041298.1 UniProtKB/TrEMBL
  ENSSTOT00000042846.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.479.30 UniProtKB/TrEMBL
InterPro Band_7 UniProtKB/TrEMBL
  Band_7/SPFH_dom_sf UniProtKB/TrEMBL
  Flotillin_C UniProtKB/TrEMBL
  Flotillin_fam UniProtKB/TrEMBL
NCBI Gene Flot1 ENTREZGENE
PANTHER FLOTILLIN-1 UniProtKB/TrEMBL
  PTHR13806 UniProtKB/TrEMBL
Pfam Band_7 UniProtKB/TrEMBL
  Flot UniProtKB/TrEMBL
SMART PHB UniProtKB/TrEMBL
Superfamily-SCOP SSF117892 UniProtKB/TrEMBL
UniProt A0A287CRZ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A287CVZ6 ENTREZGENE, UniProtKB/TrEMBL
  I3M1B8_ICTTR UniProtKB/TrEMBL