Wdr3 (WD repeat domain 3) - Rat Genome Database

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Gene: Wdr3 (WD repeat domain 3) Ictidomys tridecemlineatus
Analyze
Symbol: Wdr3
Name: WD repeat domain 3
RGD ID: 12727037
Description: ENCODES a protein that exhibits snoRNA binding (inferred); INVOLVED IN maturation of SSU-rRNA (inferred); ribosomal small subunit biogenesis (inferred); ribosome biogenesis (inferred); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH genetic disease (ortholog); thyroid gland papillary carcinoma (ortholog); FOUND IN nuclear lumen (inferred); nuclear membrane (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505811,489,954 - 11,516,144 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366272,972,959 - 3,000,356 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366272,972,939 - 2,999,052 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Wdr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505811,489,954 - 11,516,144 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366272,972,959 - 3,000,356 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366272,972,939 - 2,999,052 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381117,929,739 - 117,966,543 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1117,929,720 - 117,966,543 (+)EnsemblGRCh38hg38GRCh38
GRCh371118,472,362 - 118,509,166 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361118,273,914 - 118,304,572 (+)NCBINCBI36Build 36hg18NCBI36
Build 341118,184,432 - 118,215,091NCBI
Celera1116,700,037 - 116,730,713 (+)NCBICelera
Cytogenetic Map1p12NCBI
HuRef1116,328,793 - 116,359,471 (+)NCBIHuRef
CHM1_11118,587,659 - 118,618,340 (+)NCBICHM1_1
T2T-CHM13v2.01117,938,985 - 117,975,793 (+)NCBIT2T-CHM13v2.0
Wdr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393100,045,496 - 100,069,723 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3100,045,496 - 100,069,723 (-)EnsemblGRCm39 Ensembl
GRCm383100,138,180 - 100,162,407 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3100,138,180 - 100,162,407 (-)EnsemblGRCm38mm10GRCm38
MGSCv37399,942,103 - 99,966,326 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363100,267,241 - 100,291,450 (-)NCBIMGSCv36mm8
Celera3102,343,411 - 102,367,776 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map343.46NCBI
Wdr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82190,194,474 - 190,217,087 (-)NCBIGRCr8
mRatBN7.22187,505,816 - 187,528,432 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2187,505,816 - 187,528,432 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2195,148,763 - 195,171,278 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02192,972,418 - 192,994,942 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02187,790,929 - 187,813,453 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02202,447,749 - 202,470,398 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2202,447,745 - 202,470,399 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02221,899,188 - 221,921,867 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42195,093,948 - 195,116,591 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12195,056,701 - 195,079,341 (-)NCBI
Celera2179,954,568 - 179,977,149 (-)NCBICelera
Cytogenetic Map2q34NCBI
Wdr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543521,037,189 - 21,073,708 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543521,038,053 - 21,069,213 (+)NCBIChiLan1.0ChiLan1.0
WDR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21110,574,736 - 110,605,482 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11110,178,551 - 110,208,935 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0184,561,424 - 84,595,602 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11119,560,287 - 119,590,649 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1119,560,287 - 119,590,508 (-)Ensemblpanpan1.1panPan2
WDR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11755,225,097 - 55,254,404 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1755,225,226 - 55,254,254 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1754,868,547 - 54,897,872 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01756,104,479 - 56,133,775 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1756,104,550 - 56,133,775 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11755,138,420 - 55,167,696 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01755,176,587 - 55,205,849 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01755,751,302 - 55,780,612 (+)NCBIUU_Cfam_GSD_1.0
WDR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4102,827,190 - 102,878,585 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14102,841,459 - 102,878,636 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24112,790,944 - 112,841,022 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WDR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12015,773,294 - 15,803,157 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2015,772,511 - 15,799,581 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603818,446,315 - 18,476,727 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477213,588,552 - 13,629,071 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477213,588,392 - 13,626,070 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005334929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000003519   ⟹   ENSSTOP00000003151
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366272,972,959 - 3,000,356 (+)Ensembl
RefSeq Acc Id: XM_005334929   ⟹   XP_005334986
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505811,489,954 - 11,516,144 (-)NCBI
SpeTri2.0NW_0049366272,972,939 - 2,999,052 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005334986 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003151.2
GenBank Protein KAG3281187 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005334986   ⟸   XM_005334929
- UniProtKB: I3M2F2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000003151   ⟸   ENSSTOT00000003519
Protein Domains
Anaphase-promoting complex subunit 4-like WD40   Small-subunit processome Utp12


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003504 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003519.3 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Apc4_WD40_dom UniProtKB/TrEMBL
  G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
  SSU_processome_Utp12 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
NCBI Gene Wdr3 ENTREZGENE
PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam ANAPC4_WD40 UniProtKB/TrEMBL
  Utp12 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50998 UniProtKB/TrEMBL
UniProt I3M2F2 ENTREZGENE, UniProtKB/TrEMBL