Astn1 (astrotactin 1) - Rat Genome Database

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Gene: Astn1 (astrotactin 1) Ictidomys tridecemlineatus
Analyze
Symbol: Astn1
Name: astrotactin 1
RGD ID: 12727005
Description: INVOLVED IN cell migration (ortholog); cell-cell adhesion (ortholog); locomotory behavior (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); Brain Injuries (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN endosome (inferred); external side of plasma membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: astrotactin 1, transcript variant X1; astrotactin 1, transcript variant X2; astrotactin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934493,614,273 - 93,896,633 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648111,461,009 - 11,743,386 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648111,461,091 - 11,743,376 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Astn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934493,614,273 - 93,896,633 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648111,461,009 - 11,743,386 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648111,461,091 - 11,743,376 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381176,857,321 - 177,164,712 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1176,857,302 - 177,164,973 (-)EnsemblGRCh38hg38GRCh38
GRCh371176,826,457 - 177,133,848 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361175,096,826 - 175,400,647 (-)NCBINCBI36Build 36hg18NCBI36
Celera1149,940,230 - 150,244,095 (-)NCBICelera
Cytogenetic Map1q25.2NCBI
HuRef1148,056,525 - 148,361,033 (-)NCBIHuRef
CHM1_11178,254,310 - 178,558,015 (-)NCBICHM1_1
T2T-CHM13v2.01176,211,993 - 176,519,385 (-)NCBIT2T-CHM13v2.0
Astn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,189,647 - 158,519,351 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1158,189,843 - 158,519,351 (+)EnsemblGRCm39 Ensembl
GRCm381158,362,102 - 158,691,786 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,362,273 - 158,691,781 (+)EnsemblGRCm38mm10GRCm38
MGSCv371160,292,471 - 160,621,917 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,199,033 - 160,528,463 (+)NCBIMGSCv36mm8
Celera1160,755,390 - 161,087,245 (+)NCBICelera
Cytogenetic Map1H1NCBI
cM Map168.35NCBI
Astn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81373,070,754 - 73,388,902 (+)NCBIGRCr8
mRatBN7.21370,537,423 - 70,855,440 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1370,537,703 - 70,855,440 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1373,116,582 - 73,431,730 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01374,414,387 - 74,732,605 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01371,674,339 - 71,991,950 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01376,054,965 - 76,370,674 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1376,055,410 - 76,370,674 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01380,970,094 - 81,285,187 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41373,650,722 - 73,964,585 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11373,898,509 - 73,946,760 (+)NCBI
Celera1370,353,119 - 70,668,934 (+)NCBICelera
Cytogenetic Map13q22NCBI
Astn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540616,445,495 - 16,742,295 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540616,445,738 - 16,742,185 (-)NCBIChiLan1.0ChiLan1.0
ASTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2172,554,318 - 72,858,097 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1172,224,518 - 72,528,310 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01152,385,103 - 152,688,885 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11156,082,184 - 156,385,728 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1156,085,398 - 156,284,771 (-)Ensemblpanpan1.1panPan2
ASTN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1722,455,117 - 22,752,044 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl722,455,499 - 22,757,029 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha721,979,662 - 22,275,982 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0722,201,861 - 22,498,424 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl722,193,342 - 22,504,025 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1722,107,492 - 22,404,097 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0722,207,414 - 22,504,112 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0722,350,297 - 22,647,240 (+)NCBIUU_Cfam_GSD_1.0
ASTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9118,646,910 - 118,968,970 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19118,649,144 - 118,969,032 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29130,343,820 - 130,424,020 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASTN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12552,110,983 - 52,416,743 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2552,110,880 - 52,413,554 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605553,681,740 - 53,987,943 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Astn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247715,027,442 - 5,315,460 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247715,027,422 - 5,384,023 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000011888   ⟹   ENSSTOP00000010662
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648111,461,009 - 11,743,386 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000042446   ⟹   ENSSTOP00000027398
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648111,556,799 - 11,679,288 (+)Ensembl
RefSeq Acc Id: XM_005319771   ⟹   XP_005319828
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934493,614,277 - 93,896,633 (+)NCBI
SpeTri2.0NW_00493648111,461,091 - 11,743,376 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722629   ⟹   XP_021578304
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934493,614,275 - 93,896,633 (+)NCBI
SpeTri2.0NW_00493648111,461,354 - 11,743,376 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040278090   ⟹   XP_040134024
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934493,614,274 - 93,896,633 (+)NCBI
RefSeq Acc Id: XM_040278091   ⟹   XP_040134025
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934493,614,275 - 93,896,633 (+)NCBI
RefSeq Acc Id: XM_040278092   ⟹   XP_040134026
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934493,614,273 - 93,896,633 (+)NCBI
RefSeq Acc Id: XM_040278093   ⟹   XP_040134027
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934493,614,274 - 93,896,633 (+)NCBI
RefSeq Acc Id: XM_040278094   ⟹   XP_040134028
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934493,707,150 - 93,896,633 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005319828   ⟸   XM_005319771
- Peptide Label: isoform X4
- UniProtKB: I3MI59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021578304   ⟸   XM_021722629
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_040134026   ⟸   XM_040278092
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040134024   ⟸   XM_040278090
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040134027   ⟸   XM_040278093
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040134025   ⟸   XM_040278091
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040134028   ⟸   XM_040278094
- Peptide Label: isoform X7
RefSeq Acc Id: ENSSTOP00000027398   ⟸   ENSSTOT00000042446
RefSeq Acc Id: ENSSTOP00000010662   ⟸   ENSSTOT00000011888
Protein Domains
EGF-like   MACPF


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011879 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011888.3 UniProtKB/TrEMBL
  ENSSTOT00000042446.1 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro Annexin-like UniProtKB/TrEMBL
  ASTN1_2_EGF_Fn UniProtKB/TrEMBL
  ASTN_1_2_N UniProtKB/TrEMBL
  Astrotactin UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  MACPF UniProtKB/TrEMBL
NCBI Gene Astn1 ENTREZGENE
PANTHER ASTROTACTIN-1 UniProtKB/TrEMBL
  PTHR16592 UniProtKB/TrEMBL
Pfam Annexin_like UniProtKB/TrEMBL
  ASTN1_2_EGF_Fn UniProtKB/TrEMBL
  ASTN_1_2_N UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  MACPF UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
UniProt A0A287D1G7_ICTTR UniProtKB/TrEMBL
  I3MI59 ENTREZGENE, UniProtKB/TrEMBL