Jph1 (junctophilin 1) - Rat Genome Database

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Gene: Jph1 (junctophilin 1) Ictidomys tridecemlineatus
Analyze
Symbol: Jph1
Name: junctophilin 1
RGD ID: 12726687
Description: ENCODES a protein that exhibits structural constituent of muscle (ortholog); INVOLVED IN muscle organ development (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2K (ortholog); Charcot-Marie-Tooth disease type 4A (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); junctional membrane complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: junctophilin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530356,492,214 - 56,580,189 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366482,868,419 - 2,956,370 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Jph1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530356,492,214 - 56,580,189 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366482,868,419 - 2,956,370 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JPH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38874,234,700 - 74,321,540 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl874,234,700 - 74,321,540 (-)EnsemblGRCh38hg38GRCh38
GRCh37875,146,935 - 75,233,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36875,309,493 - 75,396,117 (-)NCBINCBI36Build 36hg18NCBI36
Build 34875,311,996 - 75,396,117NCBI
Celera871,144,786 - 71,231,414 (-)NCBICelera
Cytogenetic Map8q21.11NCBI
HuRef870,637,846 - 70,724,493 (-)NCBIHuRef
CHM1_1875,198,909 - 75,285,541 (-)NCBICHM1_1
T2T-CHM13v2.0874,663,960 - 74,750,834 (-)NCBIT2T-CHM13v2.0
Jph1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39117,012,328 - 17,168,132 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl117,034,784 - 17,168,113 (-)EnsemblGRCm39 Ensembl
GRCm38116,942,104 - 17,097,922 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,964,560 - 17,097,889 (-)EnsemblGRCm38mm10GRCm38
MGSCv37116,987,545 - 17,087,879 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,982,678 - 17,083,012 (-)NCBIMGSCv36mm8
Celera116,921,250 - 17,021,597 (-)NCBICelera
Cytogenetic Map1A3NCBI
cM Map15.17NCBI
Jph1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr856,813,553 - 6,920,488 (+)NCBIGRCr8
mRatBN7.252,030,227 - 2,137,171 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl52,030,281 - 2,125,284 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx54,146,657 - 4,241,653 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.055,785,523 - 5,880,520 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.055,473,359 - 5,568,364 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.051,417,414 - 1,511,754 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl51,417,478 - 1,511,416 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.051,413,646 - 1,507,659 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.451,110,289 - 1,207,092 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.151,110,442 - 1,204,716 (+)NCBI
Celera51,665,186 - 1,760,181 (+)NCBICelera
Cytogenetic Map5q11NCBI
Jph1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554446,108,312 - 6,176,814 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554446,108,312 - 6,176,430 (+)NCBIChiLan1.0ChiLan1.0
JPH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2789,977,880 - 90,064,163 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1865,605,684 - 65,691,948 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0870,768,560 - 70,855,068 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1872,413,794 - 72,500,252 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl872,413,794 - 72,505,309 (-)Ensemblpanpan1.1panPan2
JPH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12922,701,531 - 22,785,712 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2922,703,647 - 22,785,415 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2922,966,671 - 23,050,394 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02922,813,226 - 22,897,018 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2922,815,346 - 22,897,353 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12922,872,083 - 22,956,225 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02922,907,073 - 22,990,897 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02923,190,302 - 23,274,157 (-)NCBIUU_Cfam_GSD_1.0
JPH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl461,628,299 - 61,716,544 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1461,628,304 - 61,716,550 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2467,369,034 - 67,423,314 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JPH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1869,839,696 - 69,919,915 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl869,839,460 - 69,919,950 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603971,452,965 - 71,533,094 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Jph1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474416,937,092 - 17,013,862 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474416,937,138 - 17,013,765 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040268097   ⟹   XP_040124031
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530356,492,214 - 56,580,189 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040124031 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3274006 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040124031   ⟸   XM_040268097


Additional Information

Database Acc Id Source(s)
NCBI Gene Jph1 ENTREZGENE