Grm1 (glutamate metabotropic receptor 1) - Rat Genome Database

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Gene: Grm1 (glutamate metabotropic receptor 1) Ictidomys tridecemlineatus
Analyze
Symbol: Grm1
Name: glutamate metabotropic receptor 1
RGD ID: 12726262
Description: ENCODES a protein that exhibits nuclear estrogen receptor binding (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); cellular response to electrical stimulus (ortholog); chemical synaptic transmission (ortholog); ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); autosomal recessive spinocerebellar ataxia 13 (ortholog); Bone Tissue Neoplasms (ortholog); FOUND IN axon (ortholog); dendritic spine (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: metabotropic glutamate receptor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946132,167,285 - 132,544,694 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493662590,299 - 466,395 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493662591,229 - 468,242 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Grm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946132,167,285 - 132,544,694 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493662590,299 - 466,395 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493662591,229 - 468,242 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386146,027,707 - 146,437,601 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6146,027,646 - 146,437,601 (+)EnsemblGRCh38hg38GRCh38
GRCh376146,348,843 - 146,758,737 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366146,392,112 - 146,800,427 (+)NCBINCBI36Build 36hg18NCBI36
Build 346146,392,111 - 146,800,427NCBI
Celera6147,089,147 - 147,499,119 (+)NCBICelera
Cytogenetic Map6q24.3NCBI
HuRef6143,912,141 - 144,322,105 (+)NCBIHuRef
CHM1_16146,612,129 - 147,021,949 (+)NCBICHM1_1
T2T-CHM13v2.06147,215,189 - 147,630,683 (+)NCBIT2T-CHM13v2.0
Grm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391010,561,803 - 10,958,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1010,561,803 - 10,958,100 (-)EnsemblGRCm39 Ensembl
GRCm381010,686,059 - 11,082,382 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1010,686,059 - 11,082,356 (-)EnsemblGRCm38mm10GRCm38
MGSCv371010,408,551 - 10,802,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361010,378,943 - 10,772,546 (-)NCBIMGSCv36mm8
Celera1010,578,372 - 10,975,041 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map103.44NCBI
Grm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr816,878,542 - 7,273,447 (-)NCBIGRCr8
mRatBN7.215,058,285 - 5,453,170 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl15,058,292 - 5,453,170 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14,753,399 - 5,148,239 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0110,753,754 - 11,148,593 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.015,035,595 - 5,430,440 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014,753,141 - 5,165,859 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14,753,144 - 5,165,859 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.016,815,959 - 6,818,380 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.016,413,420 - 6,685,561 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415,318,617 - 5,744,593 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.115,318,616 - 5,744,590 (-)NCBI
Celera13,589,875 - 3,976,624 (-)NCBICelera
SHRSP x BN Map15.6799RGD
Cytogenetic Map1p13NCBI
Grm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543614,264,387 - 14,644,622 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543614,264,470 - 14,377,581 (-)NCBIChiLan1.0ChiLan1.0
GRM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25166,025,841 - 166,437,798 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16163,918,480 - 164,330,347 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06143,819,364 - 144,231,304 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16148,535,492 - 148,945,327 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6148,537,036 - 148,947,047 (+)Ensemblpanpan1.1panPan2
GRM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1137,205,817 - 37,600,048 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl137,206,542 - 37,598,134 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha138,098,496 - 38,490,369 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0137,381,684 - 37,767,160 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl137,381,685 - 37,768,980 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1137,260,006 - 37,645,862 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0137,124,615 - 37,516,108 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0137,448,182 - 37,846,268 (+)NCBIUU_Cfam_GSD_1.0
GRM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl119,183,218 - 19,572,853 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1119,183,221 - 19,572,853 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,438,453 - 21,816,533 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GRM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11325,380,855 - 25,816,945 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040201,340,468 - 201,782,555 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Grm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247537,994,321 - 8,436,120 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247537,994,419 - 8,498,243 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000021400   ⟹   ENSSTOP00000015403
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493662598,685 - 466,395 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000026395   ⟹   ENSSTOP00000022361
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493662590,299 - 466,395 (-)Ensembl
RefSeq Acc Id: XM_040283429   ⟹   XP_040139363
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946132,167,285 - 132,544,694 (+)NCBI
RefSeq Acc Id: XM_040283430   ⟹   XP_040139364
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946132,167,324 - 132,544,694 (+)NCBI
RefSeq Acc Id: XM_040283431   ⟹   XP_040139365
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946132,167,291 - 132,544,694 (+)NCBI
RefSeq Acc Id: XM_040283432   ⟹   XP_040139366
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946132,167,335 - 132,544,694 (+)NCBI
RefSeq Acc Id: XM_040283433   ⟹   XP_040139367
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946132,167,285 - 132,544,383 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_040139363   ⟸   XM_040283429
- Peptide Label: isoform X1
- UniProtKB: I3NDB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040139367   ⟸   XM_040283433
- Peptide Label: isoform X2
- UniProtKB: I3MTF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040139365   ⟸   XM_040283431
- Peptide Label: isoform X1
- UniProtKB: I3NDB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040139364   ⟸   XM_040283430
- Peptide Label: isoform X1
- UniProtKB: I3NDB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040139366   ⟸   XM_040283432
- Peptide Label: isoform X1
- UniProtKB: I3NDB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000015403   ⟸   ENSSTOT00000021400
RefSeq Acc Id: ENSSTOP00000022361   ⟸   ENSSTOT00000026395
Protein Domains
G-protein coupled receptors family 3 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025501 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021400.2 UniProtKB/TrEMBL
  ENSSTOT00000026395.2 UniProtKB/TrEMBL
Gene3D-CATH 2.10.50.30 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_CS UniProtKB/TrEMBL
  GPCR_3_mtglu_rcpt UniProtKB/TrEMBL
  GPCR_3_mtglu_rcpt_1 UniProtKB/TrEMBL
  Metabotropic_Glu_rcpt_Homer-bd UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
NCBI Gene Grm1 ENTREZGENE
PANTHER METABOTROPIC GLUTAMATE RECEPTOR UniProtKB/TrEMBL
  METABOTROPIC GLUTAMATE RECEPTOR 1 UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  GluR_Homer-bdg UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PRINTS GPCRMGR UniProtKB/TrEMBL
  MTABOTROPC1R UniProtKB/TrEMBL
  MTABOTROPICR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F3_2 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F3_3 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
SMART GluR_Homer-bdg UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
UniProt I3MTF8 ENTREZGENE, UniProtKB/TrEMBL
  I3NDB4 ENTREZGENE, UniProtKB/TrEMBL