Doc2b (double C2 domain beta) - Rat Genome Database

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Gene: Doc2b (double C2 domain beta) Ictidomys tridecemlineatus
Analyze
Symbol: Doc2b
Name: double C2 domain beta
RGD ID: 12725767
Description: ENCODES a protein that exhibits calcium-dependent phospholipid binding (ortholog); INVOLVED IN exocytosis (ortholog); positive regulation of calcium ion-dependent exocytosis (ortholog); positive regulation of vesicle fusion (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN extrinsic component of synaptic vesicle membrane (ortholog); glutamatergic synapse (ortholog); SNARE complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: double C2-like domain-containing protein beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560244,582,572 - 44,608,703 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365387,469,408 - 7,483,516 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365387,461,030 - 7,486,648 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Doc2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560244,582,572 - 44,608,703 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365387,469,408 - 7,483,516 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365387,461,030 - 7,486,648 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DOC2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3817142,789 - 181,650 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl17142,789 - 181,650 (-)EnsemblGRCh38hg38GRCh38
GRCh371767 - 31,441 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,810 - 31,270 (-)NCBINCBI36Build 36hg18NCBI36
Celera1796,907 - 129,072 (-)NCBICelera
Cytogenetic Map17p13.3NCBI
HuRef1715,749 - 39,198 (-)NCBIHuRef
CHM1_11716,004 - 40,168 (-)NCBICHM1_1
T2T-CHM13v2.01748,059 - 84,879 (-)NCBIT2T-CHM13v2.0
Doc2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391175,659,096 - 75,686,886 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1175,659,792 - 75,686,875 (-)EnsemblGRCm39 Ensembl
GRCm381175,768,270 - 75,796,060 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1175,768,966 - 75,796,049 (-)EnsemblGRCm38mm10GRCm38
MGSCv371175,582,592 - 75,609,559 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361175,585,285 - 75,612,252 (-)NCBIMGSCv36mm8
Celera1183,278,304 - 83,305,458 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.92NCBI
Doc2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81061,126,295 - 61,151,533 (-)NCBIGRCr8
mRatBN7.21060,628,029 - 60,653,267 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1060,628,029 - 60,653,267 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1065,274,693 - 65,300,895 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01064,780,111 - 64,806,313 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01060,242,686 - 60,268,888 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01063,921,255 - 63,952,944 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1063,928,064 - 63,952,726 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01064,053,913 - 64,078,844 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,115,782 - 63,140,805 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11063,129,404 - 63,154,428 (-)NCBI
Celera1059,653,415 - 59,678,192 (-)NCBICelera
Cytogenetic Map10q24NCBI
Doc2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554811,842,815 - 1,860,374 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554811,839,894 - 1,859,733 (-)NCBIChiLan1.0ChiLan1.0
DOC2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2197,677,806 - 7,716,293 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1179,235,284 - 9,272,796 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01719,854 - 58,336 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11780,050 - 123,659 (-)NCBIpanpan1.1PanPan1.1panPan2
DOC2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1945,450,270 - 45,488,638 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl945,450,302 - 45,485,247 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha944,600,738 - 44,639,091 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0946,269,076 - 46,307,688 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1945,047,177 - 45,085,473 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0945,340,905 - 45,379,302 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0945,419,613 - 45,457,959 (+)NCBIUU_Cfam_GSD_1.0
DOC2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1247,529,367 - 47,562,373 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11247,529,383 - 47,558,236 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DOC2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11617,890 - 51,080 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1619,294 - 49,309 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605922,046,077 - 22,087,709 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Doc2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247864,029,390 - 4,060,196 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247864,029,384 - 4,060,676 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000027540   ⟹   ENSSTOP00000018727
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365387,469,408 - 7,483,516 (+)Ensembl
RefSeq Acc Id: XM_040269269   ⟹   XP_040125203
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560244,582,572 - 44,608,703 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040125203 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018727.2
GenBank Protein KAG3269715 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040125203   ⟸   XM_040269269
- UniProtKB: I3N2Y1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000018727   ⟸   ENSSTOT00000027540
Protein Domains
C2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022315 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027540.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  Rabphilin/DOC2/Noc2 UniProtKB/TrEMBL
  Rabphilin_Doc2_C2A UniProtKB/TrEMBL
  Synaptotagmin UniProtKB/TrEMBL
NCBI Gene Doc2b ENTREZGENE
PANTHER DOUBLE C2-LIKE DOMAIN-CONTAINING PROTEIN BETA UniProtKB/TrEMBL
  PTHR45729 UniProtKB/TrEMBL
Pfam PF00168 UniProtKB/TrEMBL
PRINTS C2DOMAIN UniProtKB/TrEMBL
  SYNAPTOTAGMN UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt I3N2Y1 ENTREZGENE, UniProtKB/TrEMBL