Tmem59 (transmembrane protein 59) - Rat Genome Database

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Gene: Tmem59 (transmembrane protein 59) Ictidomys tridecemlineatus
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Symbol: Tmem59
Name: transmembrane protein 59
RGD ID: 12724156
Description: ENCODES a protein that exhibits endopeptidase activity (ortholog); INVOLVED IN negative regulation of protein glycosylation in Golgi (ortholog); negative regulation of protein localization to plasma membrane (ortholog); negative regulation of protein processing (ortholog); ASSOCIATED WITH Estrogen Resistance (ortholog); FOUND IN Golgi cis cisterna (ortholog); Golgi medial cisterna (ortholog); Golgi trans cisterna (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: transmembrane protein 59, transcript variant X1; transmembrane protein 59, transcript variant X2; transmembrane protein 59, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505868,289,583 - 68,311,051 (-)NCBI
SpeTri2.0NW_0049365227,105,240 - 7,126,701 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Tmem59
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505868,289,583 - 68,311,051 (-)NCBI
SpeTri2.0NW_0049365227,105,240 - 7,126,701 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM59
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl154,026,681 - 54,053,504 (-)EnsemblGRCh38hg38GRCh38
GRCh38154,026,681 - 54,053,573 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37154,492,354 - 54,519,246 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36154,269,937 - 54,291,699 (-)NCBINCBI36hg18NCBI36
Build 34154,209,371 - 54,231,132NCBI
Celera152,785,013 - 52,806,776 (-)NCBI
Cytogenetic Map1p32.3NCBI
HuRef152,613,050 - 52,634,813 (-)NCBIHuRef
CHM1_1154,613,674 - 54,635,436 (-)NCBICHM1_1
Tmem59
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394107,035,827 - 107,058,193 (+)NCBIGRCm39mm39
GRCm39 Ensembl4107,035,596 - 107,058,193 (+)Ensembl
GRCm384107,178,630 - 107,200,996 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4107,178,399 - 107,200,996 (+)EnsemblGRCm38mm10GRCm38
MGSCv374106,851,235 - 106,873,601 (+)NCBIGRCm37mm9NCBIm37
MGSCv364106,676,624 - 106,698,919 (+)NCBImm8
Celera4105,540,687 - 105,562,958 (+)NCBICelera
Cytogenetic Map4C7NCBI
cM Map450.12NCBI
Tmem59
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25121,962,507 - 121,983,625 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl5126,783,061 - 126,804,175 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05126,783,061 - 126,804,177 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05130,632,421 - 130,653,537 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.15128,275,517 - 128,296,625 (+)NCBI
Celera5120,708,235 - 120,729,351 (+)NCBICelera
Cytogenetic Map5q34NCBI
Tmem59
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554645,193,272 - 5,222,974 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554645,193,173 - 5,222,089 (+)NCBIChiLan1.0ChiLan1.0
TMEM59
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1154,899,026 - 54,920,589 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl154,899,026 - 54,920,478 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0153,305,154 - 53,326,975 (-)NCBIMhudiblu_PPA_v0panPan3
TMEM59
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1554,959,895 - 54,991,978 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl554,960,069 - 54,987,758 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha555,026,697 - 55,054,554 (+)NCBI
ROS_Cfam_1.0555,147,972 - 55,175,764 (+)NCBI
UMICH_Zoey_3.1555,142,450 - 55,170,222 (+)NCBI
UNSW_CanFamBas_1.0555,031,959 - 55,059,803 (+)NCBI
UU_Cfam_GSD_1.0555,421,645 - 55,449,490 (+)NCBI
TMEM59
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6158,261,993 - 158,290,483 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16158,261,936 - 158,290,465 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26145,908,513 - 145,933,402 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM59
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12078,884,722 - 78,907,954 (+)NCBI
ChlSab1.1 Ensembl2078,884,768 - 78,907,476 (+)Ensembl
Vero_WHO_p1.0NW_02366603338,374,722 - 38,397,688 (-)NCBI
Tmem59
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624934456,221 - 485,343 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005326036   ⟹   XP_005326093
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505868,289,583 - 68,311,051 (-)NCBI
SpeTri2.0NW_0049365227,105,240 - 7,126,701 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013358944   ⟹   XP_013214398
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365227,105,244 - 7,126,193 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013358946   ⟹   XP_013214400
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505868,289,583 - 68,311,051 (-)NCBI
SpeTri2.0NW_0049365227,105,240 - 7,126,701 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040288712   ⟹   XP_040144646
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505868,290,082 - 68,311,050 (-)NCBI
RefSeq Acc Id: XM_040288713   ⟹   XP_040144647
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505868,290,082 - 68,311,050 (-)NCBI
RefSeq Acc Id: XM_040288714   ⟹   XP_040144648
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505868,290,082 - 68,311,049 (-)NCBI
RefSeq Acc Id: XM_040288715   ⟹   XP_040144649
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505868,290,082 - 68,311,049 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_013214400   ⟸   XM_013358946
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_005326093   ⟸   XM_005326036
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013214398   ⟸   XM_013358944
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040144647   ⟸   XM_040288713
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040144646   ⟸   XM_040288712
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040144649   ⟸   XM_040288715
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040144648   ⟸   XM_040288714
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002676 ENTREZGENE
Ensembl Protein ENSSTOP00000002394 ENTREZGENE
NCBI Gene Tmem59 ENTREZGENE