Gpatch2l (G-patch domain containing 2 like) - Rat Genome Database

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Gene: Gpatch2l (G-patch domain containing 2 like) Ictidomys tridecemlineatus
Analyze
Symbol: Gpatch2l
Name: G-patch domain containing 2 like
RGD ID: 12723826
Description: ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: G patch domain-containing protein 2-like; G-patch domain containing 2 like, transcript variant X1; G-patch domain containing 2 like, transcript variant X2; G-patch domain containing 2 like, transcript variant X3; G-patch domain containing 2 like, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864026,856,662 - 26,915,102 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364885,153,875 - 5,202,956 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364885,153,877 - 5,205,515 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Gpatch2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864026,856,662 - 26,915,102 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364885,153,875 - 5,202,956 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364885,153,877 - 5,205,515 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPATCH2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381476,151,922 - 76,235,555 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1476,151,916 - 76,254,342 (+)EnsemblGRCh38hg38GRCh38
GRCh371476,618,265 - 76,680,686 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361475,688,012 - 75,738,887 (+)NCBINCBI36Build 36hg18NCBI36
Build 341475,688,011 - 75,738,886NCBI
Celera1456,656,362 - 56,707,266 (+)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1456,786,734 - 56,837,359 (+)NCBIHuRef
CHM1_11476,556,028 - 76,606,927 (+)NCBICHM1_1
T2T-CHM13v2.01470,361,062 - 70,423,507 (+)NCBIT2T-CHM13v2.0
Gpatch2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391286,288,569 - 86,341,439 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1286,288,632 - 86,338,558 (+)EnsemblGRCm39 Ensembl
GRCm381286,241,795 - 86,294,657 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1286,241,858 - 86,291,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv371287,582,828 - 87,632,318 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361287,130,981 - 87,180,471 (+)NCBIMGSCv36mm8
Celera1287,702,997 - 87,752,504 (+)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1240.36NCBI
Gpatch2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86111,614,344 - 111,666,603 (+)NCBIGRCr8
mRatBN7.26105,883,383 - 105,935,644 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6105,883,460 - 105,934,888 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6106,053,587 - 106,101,153 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06106,352,473 - 106,400,045 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06105,722,104 - 105,769,666 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06110,093,767 - 110,228,943 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6110,093,819 - 110,227,475 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06119,400,117 - 119,436,183 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.06119,518,540 - 119,527,025 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46110,354,283 - 110,404,857 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16110,357,809 - 110,409,578 (+)NCBI
Celera6103,709,800 - 103,760,327 (+)NCBICelera
Cytogenetic Map6q31NCBI
Gpatch2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955438214,706 - 261,686 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955438214,882 - 263,937 (+)NCBIChiLan1.0ChiLan1.0
GPATCH2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21577,240,971 - 77,327,866 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11476,457,478 - 76,528,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01456,710,528 - 56,776,832 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11475,553,827 - 75,613,381 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1475,554,507 - 75,606,594 (+)Ensemblpanpan1.1panPan2
GPATCH2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1849,101,267 - 49,157,008 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl849,101,138 - 49,152,491 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha848,783,617 - 48,839,352 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0849,325,352 - 49,381,100 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl849,325,391 - 49,381,310 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1848,997,696 - 49,053,414 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0849,019,620 - 49,075,348 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0849,415,932 - 49,471,712 (+)NCBIUU_Cfam_GSD_1.0
GPATCH2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl799,325,569 - 99,375,428 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1799,325,536 - 99,376,291 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27105,370,849 - 105,426,505 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPATCH2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12453,401,799 - 53,453,023 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2453,401,822 - 53,452,080 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605341,618,112 - 41,680,046 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpatch2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473425,516,772 - 25,562,927 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473425,461,801 - 25,562,896 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000015091   ⟹   ENSSTOP00000013524
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364885,154,174 - 5,202,956 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000043300   ⟹   ENSSTOP00000026784
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364885,153,875 - 5,202,956 (+)Ensembl
RefSeq Acc Id: XM_013356871   ⟹   XP_013212325
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864026,866,012 - 26,915,102 (-)NCBI
SpeTri2.0NW_0049364885,153,877 - 5,205,515 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013356872   ⟹   XP_013212326
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864026,866,012 - 26,915,082 (-)NCBI
SpeTri2.0NW_0049364885,153,901 - 5,205,515 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021723805   ⟹   XP_021579480
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864026,856,662 - 26,915,082 (-)NCBI
SpeTri2.0NW_0049364885,153,901 - 5,205,515 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040276444   ⟹   XP_040132378
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864026,866,012 - 26,915,069 (-)NCBI
RefSeq Acc Id: XM_040276445   ⟹   XP_040132379
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864026,867,907 - 26,915,087 (-)NCBI
RefSeq Acc Id: XR_005730074
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864026,866,037 - 26,915,084 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013212326   ⟸   XM_013356872
- Peptide Label: isoform X2
- UniProtKB: I3MP53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212325   ⟸   XM_013356871
- Peptide Label: isoform X3
- UniProtKB: I3MP53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579480   ⟸   XM_021723805
- Peptide Label: isoform X1
- UniProtKB: I3MP53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040132378   ⟸   XM_040276444
- Peptide Label: isoform X3
- UniProtKB: I3MP53 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040132379   ⟸   XM_040276445
- Peptide Label: isoform X4
- UniProtKB: I3MP53 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000026784   ⟸   ENSSTOT00000043300
RefSeq Acc Id: ENSSTOP00000013524   ⟸   ENSSTOT00000015091


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015086 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015091.3 UniProtKB/TrEMBL
  ENSSTOT00000043300.1 UniProtKB/TrEMBL
NCBI Gene Gpatch2l ENTREZGENE
PANTHER G PATCH DOMAIN CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  G PATCH DOMAIN-CONTAINING PROTEIN 2-LIKE UniProtKB/TrEMBL
UniProt I3MP53 ENTREZGENE, UniProtKB/TrEMBL