Ccdc121 (coiled-coil domain containing 121)

Gene: Ccdc121 (coiled-coil domain containing 121) Ictidomys tridecemlineatus

Analyze

Symbol:

Ccdc121

Name:

coiled-coil domain containing 121

RGD ID:

12723305

Description:

ASSOCIATED WITH genetic disease (ortholog); Tatton-Brown-Rahman syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 121

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	65,844,214 - 65,847,059 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936493	4,992,691 - 4,995,273 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Tatton-Brown-Rahman syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

Ccdc121
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	65,844,214 - 65,847,059 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936493	4,992,691 - 4,995,273 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC121
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	27,625,638 - 27,629,012 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	27,625,638 - 27,629,012 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	27,848,505 - 27,851,879 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	27,702,010 - 27,705,383 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	27,693,962 - 27,697,354 (-)	NCBI		Celera
Cytogenetic Map	2	p23.3	NCBI
HuRef	2	27,590,152 - 27,593,544 (-)	NCBI		HuRef
CHM1_1	2	27,779,242 - 27,782,634 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	27,668,723 - 27,672,097 (-)	NCBI		T2T-CHM13v2.0

Ccdc121
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	31,643,205 - 31,645,820 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	31,643,084 - 31,645,820 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	31,485,859 - 31,488,262 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	31,485,740 - 31,488,476 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	31,788,232 - 31,790,635 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	31,762,440 - 31,764,843 (+)	NCBI		MGSCv36	mm8
Celera	5	28,964,610 - 28,967,013 (+)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI
cM Map	5	17.27	NCBI

Ccdc121rt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	95,785,468 - 95,787,135 (-)	NCBI		GRCr8
mRatBN7.2	13	93,253,752 - 93,255,419 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	93,254,387 - 93,255,358 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	13	99,819,380 - 99,821,055 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	99,820,015 - 99,820,986 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	104,807,454 - 104,809,082 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	97,547,067 - 97,548,038 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	92,794,691 - 92,796,366 (-)	NCBI		Celera
Cytogenetic Map	13	q26	NCBI

Ccdc121
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955469	7,771,788 - 7,774,261 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC121
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	98,887,207 - 98,890,613 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	98,891,176 - 98,894,582 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	27,622,385 - 27,626,907 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	27,709,712 - 27,713,071 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	27,709,782 - 27,713,085 (-)	Ensembl	panpan1.1		panPan2

LOC100688011
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	21,542,252 - 21,545,538 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	21,446,048 - 21,449,392 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	21,923,984 - 21,926,965 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	21,925,297 - 21,926,127 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.0	17	21,558,180 - 21,561,522 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	21,681,030 - 21,683,303 (-)	NCBI		UU_Cfam_GSD_1.0

CCDC121
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	111,565,045 - 111,570,457 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	118,531,416 - 118,535,164 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC121
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	80,006,719 - 80,009,957 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	80,006,833 - 80,010,066 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	32,146,726 - 32,150,199 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc121
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624738	7,941,363 - 7,944,168 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005322508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013357361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040271518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010001352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005322508 ⟹ XP_005322565

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	65,844,214 - 65,847,059 (-)	NCBI
SpeTri2.0	NW_004936493	4,992,691 - 4,995,273 (+)	NCBI

Sequence:

show sequence

CTGGAGGTAGCCAGGAAGAGGGCACCGACGTAGTAGAGTAGGAACTGAGAGGGGCACAGCCCTA
GTCCCAGGAGGGCTAGAGGAGATGGCATCTCACGGGCAGGACTCCCGGTGTTCGAAAACGAGAA
GCGAGCACCTCTTTGTCAGCCCCAAAGCAGCGGGATACCAAACTGCTAGAGGGGCGGCTGCTAG
GCCTCATTTGTCCCCTGAGGTGCTTAAACTGCTAATATCTGTACCAGCCACAAGTATGGCAGTG
TGCGATCTCCGGAGTTGCTGGGTACAGCAGAGTCTCATTGACTACCGAAAGAAACGATCACGAG
AACCTCCACTATATGAAAGCTTCCAGCCGCGCCGGACCCTTGACACTAGCGCTCGATCTTCCGC
AGTCACCCTCACTGAATTACATAGTTGCCCTAGTGAACGCTTGGATTCCGGGAGCAGGTTTGCT
GAGACCCACATGAGTCCTCATACATCAACATATCTAAGTATGTTACATAAATTTTTCACACCAG
ACAACCTAACAAAGTGGGAGAAAAGGGTTAAAGGAAAGACAGTATTGGCACTGAAGAAGCTAAA
CAAGGAAATGGAAGAAGTTCAAATCCACAGGGACCTGGTACTGGAGGAATGCAGAGCACTACAC
AAGGAAAAGTTACTTGTTGAAGCTGACAGCAAATTCTTTCTGGAATACCTAGCCCAGAAAAATA
AGCACTGTAGACAGCTACATGAAGACCTCTGGAAGGAGTATTTTCAAAAATGTGGGGCGATAGA
AAAAAGGAGACAAGAATTATCCTCCAAATATGCAAAGCAAACTTCAGACCTTAAAGCACAACAA
CTGCAGGGGAAAAAGACACAAGCCAATTTAAAAGAGCAGTTGAAGGCCTTAAAGAATATTTCAA
AAATAAAAGAGAAACAGGACATGAGAATAGAGTCCTTAGAAAAGGAGAAAGAGAAAATCAAAGC
TGAAACACCACTAAAGGACCAGAAAGCACACTTGCAATTCCTCCAGCAAAAAGCACTCCTGGAG
AAGCAACTGACTGATCCATACAAGAAGCAGTCAGGAGAGAGAAAAAAATTTATTAAGGCACAGA
CCTTGGAGTCCATAGCACAGAAGTCTAGTTTTGAGTTCTGCCGTGGGGTCTACAAAGAGAACCT
ACAGTTACAGGAGGAATTACTGCAGCTACTCGAGATATCCAAGAAGTTGAAGGCTGCTCGAAGC
CAGTTAGAAAACCAGAAGCAGCAGCTGGAGCAGGAACAGTGGTATCAGGAATGCTTAATCAGGG
GGAAGCAAAGACTGCAAGCAAGGCCTCACTGGTGCCCAAAAGAAGAAGGTGCTACAAAGACCAC
ATTGAGCCCTATCAGTACCAAAGCAAGAATTAAATCCAAAGTAATTCCTAAAATAACATGAAAT
AAGAATTGGAGCAAATATTCTTAGTTACTACATAAACGCGTACTAAGAAGGCTTTTGGATTGCA
GATTACTAGGCTAAAATATCCGTTGTGGAAAATCATTTTGATATTTCTCATCACTACAATTTCT
AAAACAAAGTTGAATATATTTTCCAGTAGAGAAACAATGTTAAAATATGGGATCATACTCTGTT
CTAGGATTCACAGTCCAATAAATCACTGGTCTAGCCTCAGTCTGTCATAAATACAAAAAATACA
ACTACCTTAAAAGACTAATTTAAAATACTGTTTTAAAAGTATTAAGATATTTGGATACCTTTTT
TCTTTTTTGAGTCTTGTTCCATTTATTTTCTGTAGCAGCATTTGAAATTCTAAAGATGACAAAA
ATTCTAAGTATTTCAGGTCATGAGTTTTTTCTTACATATGTACTTTGTGTACCACAAAGTTCCT
TTGTAATGTGTATGTTCCATATATTTATGCTCATTTAGAACTAGGACTCTTATTTTAAATTAGT
GTAGACTTTCTTTTAGAGGAATTGTATTTTTTGCATTTGACTGAGGCTAGACCAGTGATTTATT
GGAATGTGAATCCTTGCATGATGATCCCATATTTTAACATTGCTTCTCTAATGGAAGATATAAT
CAACTTTATATTTTCCAGAAAAACTTCAAAATTTCTGAG

hide sequence

RefSeq Acc Id:

XM_013357361 ⟹ XP_013212815

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	65,844,214 - 65,846,682 (-)	NCBI
SpeTri2.0	NW_004936493	4,992,952 - 4,995,273 (+)	NCBI

Sequence:

show sequence

TCTCCGGAGTTGCTGGGTACAGCAGAGTCTCATTGACTACCGAAAGAAACGATCACGAGAACCT
CCACTATATGAAAGCTTCCAGCCGCGCCGGACCCTTGACACTAGCGCTCGATCTTCCGCAGTCA
CCCTCACTGAATTACATAGTTGCCCTAGTGAACGCTTGGATTCCGGGAGCAGGTAGGTTTGCTG
AGACCCACATGAGTCCTCATACATCAACATATCTAAGTATGTTACATAAATTTTTCACACCAGA
CAACCTAACAAAGTGGGAGAAAAGGGTTAAAGGAAAGACAGTATTGGCACTGAAGAAGCTAAAC
AAGGAAATGGAAGAAGTTCAAATCCACAGGGACCTGGTACTGGAGGAATGCAGAGCACTACACA
AGGAAAAGTTACTTGTTGAAGCTGACAGCAAATTCTTTCTGGAATACCTAGCCCAGAAAAATAA
GCACTGTAGACAGCTACATGAAGACCTCTGGAAGGAGTATTTTCAAAAATGTGGGGCGATAGAA
AAAAGGAGACAAGAATTATCCTCCAAATATGCAAAGCAAACTTCAGACCTTAAAGCACAACAAC
TGCAGGGGAAAAAGACACAAGCCAATTTAAAAGAGCAGTTGAAGGCCTTAAAGAATATTTCAAA
AATAAAAGAGAAACAGGACATGAGAATAGAGTCCTTAGAAAAGGAGAAAGAGAAAATCAAAGCT
GAAACACCACTAAAGGACCAGAAAGCACACTTGCAATTCCTCCAGCAAAAAGCACTCCTGGAGA
AGCAACTGACTGATCCATACAAGAAGCAGTCAGGAGAGAGAAAAAAATTTATTAAGGCACAGAC
CTTGGAGTCCATAGCACAGAAGTCTAGTTTTGAGTTCTGCCGTGGGGTCTACAAAGAGAACCTA
CAGTTACAGGAGGAATTACTGCAGCTACTCGAGATATCCAAGAAGTTGAAGGCTGCTCGAAGCC
AGTTAGAAAACCAGAAGCAGCAGCTGGAGCAGGAACAGTGGTATCAGGAATGCTTAATCAGGGG
GAAGCAAAGACTGCAAGCAAGGCCTCACTGGTGCCCAAAAGAAGAAGGTGCTACAAAGACCACA
TTGAGCCCTATCAGTACCAAAGCAAGAATTAAATCCAAAGTAATTCCTAAAATAACATGAAATA
AGAATTGGAGCAAATATTCTTAGTTACTACATAAACGCGTACTAAGAAGGCTTTTGGATTGCAG
ATTACTAGGCTAAAATATCCGTTGTGGAAAATCATTTTGATATTTCTCATCACTACAATTTCTA
AAACAAAGTTGAATATATTTTCCAGTAGAGAAACAATGTTAAAATATGGGATCATACTCTGTTC
TAGGATTCACAGTCCAATAAATCACTGGTCTAGCCTCAGTCTGTCATAAATACAAAAAATACAA
CTACCTTAAAAGACTAATTTAAAATACTGTTTTAAAAGTATTAAGATATTTGGATACCTTTTTT
CTTTTTTGAGTCTTGTTCCATTTATTTTCTGTAGCAGCATTTGAAATTCTAAAGATGACAAAAA
TTCTAAGTATTTCAGGTCATGAGTTTTTTCTTACATATGTACTTTGTGTACCACAAAGTTCCTT
TGTAATGTGTATGTTCCATATATTTATGCTCATTTAGAACTAGGACTCTTATTTTAAATTAGTG
TAGACTTTCTTTTAGAGGAATTGTATTTTTTGCATTTGACTGAGGCTAGACCAGTGATTTATTG
GAATGTGAATCCTTGCATGATGATCCCATATTTTAACATTGCTTCTCTAATGGAAGATATAATC
AACTTTATATTTTCCAGAAAAACTTCAAAATTTCTGAG

hide sequence

RefSeq Acc Id:

XM_040271518 ⟹ XP_040127452

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	65,844,214 - 65,847,046 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005322565	(Get FASTA)	NCBI Sequence Viewer
	XP_013212815	(Get FASTA)	NCBI Sequence Viewer
	XP_040127452	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000018751.2
GenBank Protein	KAG3267822	(Get FASTA)	NCBI Sequence Viewer
	KAG3267823	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005322565 ⟸ XM_005322508
- Peptide Label:	isoform X1
- UniProtKB:	I3N305 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASHGQDSRCSKTRSEHLFVSPKAAGYQTARGAAARPHLSPEVLKLLISVPATSMAVCDLRSCW VQQSLIDYRKKRSREPPLYESFQPRRTLDTSARSSAVTLTELHSCPSERLDSGSRFAETHMSPH TSTYLSMLHKFFTPDNLTKWEKRVKGKTVLALKKLNKEMEEVQIHRDLVLEECRALHKEKLLVE ADSKFFLEYLAQKNKHCRQLHEDLWKEYFQKCGAIEKRRQELSSKYAKQTSDLKAQQLQGKKTQ ANLKEQLKALKNISKIKEKQDMRIESLEKEKEKIKAETPLKDQKAHLQFLQQKALLEKQLTDPY KKQSGERKKFIKAQTLESIAQKSSFEFCRGVYKENLQLQEELLQLLEISKKLKAARSQLENQKQ QLEQEQWYQECLIRGKQRLQARPHWCPKEEGATKTTLSPISTKARIKSKVIPKIT hide sequence

RefSeq Acc Id:

XP_013212815 ⟸ XM_013357361

- Peptide Label:

isoform X2

- Sequence:

show sequence

MKASSRAGPLTLALDLPQSPSLNYIVALVNAWIPGAGRFAETHMSPHTSTYLSMLHKFFTPDNL
TKWEKRVKGKTVLALKKLNKEMEEVQIHRDLVLEECRALHKEKLLVEADSKFFLEYLAQKNKHC
RQLHEDLWKEYFQKCGAIEKRRQELSSKYAKQTSDLKAQQLQGKKTQANLKEQLKALKNISKIK
EKQDMRIESLEKEKEKIKAETPLKDQKAHLQFLQQKALLEKQLTDPYKKQSGERKKFIKAQTLE
SIAQKSSFEFCRGVYKENLQLQEELLQLLEISKKLKAARSQLENQKQQLEQEQWYQECLIRGKQ
RLQARPHWCPKEEGATKTTLSPISTKARIKSKVIPKIT

hide sequence

RefSeq Acc Id:	XP_040127452 ⟸ XM_040271518
- Peptide Label:	isoform X3

Protein Domains

DUF4515

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000022866	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000029964.2	UniProtKB/TrEMBL
InterPro	DUF4515	UniProtKB/TrEMBL
NCBI Gene	Ccdc121	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING 121	UniProtKB/TrEMBL
	COILED-COIL DOMAIN-CONTAINING 166	UniProtKB/TrEMBL
Pfam	DUF4515	UniProtKB/TrEMBL
UniProt	I3N305	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar