Mkx (mohawk homeobox) - Rat Genome Database

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Gene: Mkx (mohawk homeobox) Ictidomys tridecemlineatus
Analyze
Symbol: Mkx
Name: mohawk homeobox
RGD ID: 12723050
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); collagen fibril organization (ortholog); intratendonous ossification (ortholog); ASSOCIATED WITH genetic disease (ortholog); Heterotopic Ossification (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein Mohawk
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093447,469,239 - 7,533,485 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366132,019,783 - 2,084,267 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366132,019,815 - 2,083,724 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mkx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093447,469,239 - 7,533,485 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366132,019,783 - 2,084,267 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366132,019,815 - 2,083,724 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MKX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381027,672,874 - 27,745,819 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1027,672,874 - 27,746,060 (-)EnsemblGRCh38hg38GRCh38
GRCh371027,961,803 - 28,034,748 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361028,001,809 - 28,074,753 (-)NCBINCBI36Build 36hg18NCBI36
Build 341028,001,811 - 28,074,753NCBI
Celera1027,725,254 - 27,798,252 (-)NCBICelera
Cytogenetic Map10p12.1NCBI
HuRef1027,678,080 - 27,751,075 (-)NCBIHuRef
CHM1_11027,961,725 - 28,034,733 (-)NCBICHM1_1
T2T-CHM13v2.01027,703,607 - 27,776,565 (-)NCBIT2T-CHM13v2.0
Mkx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,934,966 - 7,004,779 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl186,934,518 - 7,004,780 (-)EnsemblGRCm39 Ensembl
GRCm38186,934,966 - 7,004,779 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,934,518 - 7,004,780 (-)EnsemblGRCm38mm10GRCm38
MGSCv37186,934,964 - 7,004,777 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36186,934,998 - 7,004,754 (-)NCBIMGSCv36mm8
Celera186,980,394 - 7,049,750 (-)NCBICelera
Cytogenetic Map18A1NCBI
cM Map184.53NCBI
Mkx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81759,772,113 - 59,851,160 (-)NCBIGRCr8
mRatBN7.21755,077,073 - 55,156,877 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1755,077,540 - 55,156,124 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01760,537,615 - 60,553,284 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1760,537,935 - 60,549,750 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01762,321,329 - 62,332,471 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41763,631,540 - 63,710,138 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11763,642,477 - 63,722,172 (-)NCBI
Celera1756,416,753 - 56,495,058 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
Mkx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554621,564,191 - 1,631,951 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554621,564,739 - 1,631,613 (-)NCBIChiLan1.0ChiLan1.0
MKX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2840,340,819 - 40,420,027 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11040,346,145 - 40,420,917 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01027,820,454 - 27,893,373 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11028,181,483 - 28,254,311 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1028,181,483 - 28,254,311 (-)Ensemblpanpan1.1panPan2
LOC487079
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.125,898,155 - 5,964,577 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha24,371,377 - 4,437,081 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.024,651,755 - 4,720,172 (+)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.0216,010,859 - 16,077,012 (+)NCBIUNSW_CanFamBas_1.0
MKX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1039,096,782 - 39,172,198 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11039,096,778 - 39,173,384 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21053,679,406 - 53,744,157 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MKX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1927,228,061 - 27,305,852 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605133,247,101 - 33,322,551 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mkx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248056,061,635 - 6,121,926 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248056,060,131 - 6,122,305 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000021357   ⟹   ENSSTOP00000020696
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366132,019,783 - 2,084,267 (-)Ensembl
RefSeq Acc Id: XM_005334283   ⟹   XP_005334340
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244093447,469,239 - 7,533,485 (-)NCBI
SpeTri2.0NW_0049366132,019,815 - 2,083,724 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040277489   ⟹   XP_040133423
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244093447,469,239 - 7,532,463 (-)NCBI
RefSeq Acc Id: XM_040277490   ⟹   XP_040133424
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244093447,471,621 - 7,532,471 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005334340 (Get FASTA)   NCBI Sequence Viewer  
  XP_040133423 (Get FASTA)   NCBI Sequence Viewer  
  XP_040133424 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020696.2
GenBank Protein KAG3257412 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005334340   ⟸   XM_005334283
- Peptide Label: isoform X2
- UniProtKB: I3N8K0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040133423   ⟸   XM_040277489
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040133424   ⟸   XM_040277490
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000020696   ⟸   ENSSTOT00000021357
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028463 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021357.2 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_KN_domain UniProtKB/TrEMBL
NCBI Gene Mkx ENTREZGENE
PANTHER HOMEOBOX PROTEIN MOHAWK UniProtKB/TrEMBL
  IROQUOIS-CLASS HOMEODOMAIN PROTEIN IRX UniProtKB/TrEMBL
Pfam Homeobox_KN UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt I3N8K0 ENTREZGENE, UniProtKB/TrEMBL