Hmgxb3 (HMG-box containing 3) - Rat Genome Database

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Gene: Hmgxb3 (HMG-box containing 3) Ictidomys tridecemlineatus
Analyze
Symbol: Hmgxb3
Name: HMG-box containing 3
RGD ID: 12722880
Description: ENCODES a protein that exhibits DNA binding (inferred); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HMG domain-containing protein 3; HMG-box containing 3, transcript variant X1; HMG-box containing 3, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213143,353,380 - 143,402,900 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365044,925,993 - 4,973,308 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365044,927,345 - 4,977,161 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function
DNA binding  (IEA)

References

Genomics

Comparative Map Data
Hmgxb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213143,353,380 - 143,402,900 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365044,925,993 - 4,973,308 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365044,927,345 - 4,977,161 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMGXB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385150,000,739 - 150,053,128 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5150,000,046 - 150,053,142 (+)EnsemblGRCh38hg38GRCh38
GRCh375149,380,302 - 149,432,691 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365149,360,047 - 149,413,965 (+)NCBINCBI36Build 36hg18NCBI36
Celera5145,461,556 - 145,514,089 (+)NCBICelera
Cytogenetic Map5q32NCBI
HuRef5144,528,135 - 144,580,656 (+)NCBIHuRef
CHM1_15148,812,860 - 148,865,397 (+)NCBICHM1_1
T2T-CHM13v2.05150,537,285 - 150,589,675 (+)NCBIT2T-CHM13v2.0
Hmgxb3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391861,264,349 - 61,310,122 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1861,264,349 - 61,310,122 (-)EnsemblGRCm39 Ensembl
GRCm381861,131,277 - 61,177,050 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1861,131,277 - 61,177,050 (-)EnsemblGRCm38mm10GRCm38
MGSCv371861,290,931 - 61,336,704 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361861,246,755 - 61,302,419 (-)NCBIMGSCv36mm8
Celera1862,418,067 - 62,463,720 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1834.41NCBI
Hmgxb3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81856,860,947 - 56,908,419 (-)NCBIGRCr8
mRatBN7.21854,590,558 - 54,638,050 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1854,590,560 - 54,638,155 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01856,458,443 - 56,502,881 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,460,395 - 56,500,941 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,689,440 - 55,733,838 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1852,742,879 - 52,790,420 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
Hmgxb3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554154,463,580 - 4,506,961 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554154,462,653 - 4,509,622 (-)NCBIChiLan1.0ChiLan1.0
HMGXB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24145,229,698 - 145,282,882 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15143,369,236 - 143,422,431 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05145,425,199 - 145,478,563 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15151,430,875 - 151,483,787 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5151,430,444 - 151,485,025 (+)Ensemblpanpan1.1panPan2
HMGXB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1459,010,839 - 59,055,384 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl459,011,783 - 59,078,892 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,776,801 - 58,823,847 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0459,491,327 - 59,538,374 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl459,452,287 - 59,538,710 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1459,280,087 - 59,327,396 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0459,394,674 - 59,441,764 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0459,925,715 - 59,972,764 (-)NCBIUU_Cfam_GSD_1.0
HMGXB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2151,036,191 - 151,102,029 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12151,028,776 - 151,102,027 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22157,807,119 - 157,855,424 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HMGXB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12352,611,138 - 52,663,144 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2352,611,370 - 52,662,193 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603425,053,898 - 25,105,631 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hmgxb3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247749,294,612 - 9,362,101 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247749,291,339 - 9,362,997 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000008796   ⟹   ENSSTOP00000007885
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365044,928,294 - 4,973,306 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000024566   ⟹   ENSSTOP00000021530
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365044,925,993 - 4,973,308 (-)Ensembl
RefSeq Acc Id: XM_040272856   ⟹   XP_040128790
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213143,353,380 - 143,399,335 (-)NCBI
RefSeq Acc Id: XM_040272857   ⟹   XP_040128791
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213143,353,380 - 143,402,900 (-)NCBI
RefSeq Acc Id: XM_040272858   ⟹   XP_040128792
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213143,353,380 - 143,402,900 (-)NCBI
RefSeq Acc Id: XM_040272859   ⟹   XP_040128793
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213143,356,418 - 143,402,900 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_040128792   ⟸   XM_040272858
- Peptide Label: isoform X3
- UniProtKB: I3MCB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040128791   ⟸   XM_040272857
- Peptide Label: isoform X2
- UniProtKB: I3MCB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040128790   ⟸   XM_040272856
- Peptide Label: isoform X1
- UniProtKB: I3NAY3 (UniProtKB/TrEMBL),   I3MCB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040128793   ⟸   XM_040272859
- Peptide Label: isoform X4
- UniProtKB: I3MCB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000021530   ⟸   ENSSTOT00000024566
RefSeq Acc Id: ENSSTOP00000007885   ⟸   ENSSTOT00000008796
Protein Domains
HMG box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008763 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008796.3 UniProtKB/TrEMBL
  ENSSTOT00000024566.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
InterPro HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  HMGXB3 UniProtKB/TrEMBL
  HMGXB3_CxC4 UniProtKB/TrEMBL
NCBI Gene Hmgxb3 ENTREZGENE
PANTHER HMG DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  PTHR17609 UniProtKB/TrEMBL
Pfam CxC4 UniProtKB/TrEMBL
  HMG_box_2 UniProtKB/TrEMBL
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/TrEMBL
UniProt I3MCB1 ENTREZGENE, UniProtKB/TrEMBL
  I3NAY3 ENTREZGENE, UniProtKB/TrEMBL