Cadm3 (cell adhesion molecule 3) - Rat Genome Database

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Gene: Cadm3 (cell adhesion molecule 3) Ictidomys tridecemlineatus
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Symbol: Cadm3
Name: cell adhesion molecule 3
RGD ID: 12720547
Description: ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); protein localization (ortholog); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); Charcot-Marie-Tooth Disease Axonal Type 2FF (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cell-cell junction (ortholog); parallel fiber to Purkinje cell synapse (ortholog); presynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell adhesion molecule 3, transcript variant X1; cell adhesion molecule 3, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050585,423,134 - 5,454,101 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367401,299,043 - 1,331,453 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367401,298,512 - 1,331,376 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cadm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050585,423,134 - 5,454,101 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367401,299,043 - 1,331,453 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367401,298,512 - 1,331,376 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CADM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,171,615 - 159,203,313 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,171,609 - 159,203,313 (+)EnsemblGRCh38hg38GRCh38
GRCh371159,141,405 - 159,173,103 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,408,044 - 157,438,426 (+)NCBINCBI36Build 36hg18NCBI36
Build 341155,954,492 - 155,984,874NCBI
Celera1132,211,622 - 132,243,171 (+)NCBICelera
Cytogenetic Map1q23.2NCBI
HuRef1130,498,522 - 130,530,071 (+)NCBIHuRef
CHM1_11160,536,806 - 160,568,362 (+)NCBICHM1_1
T2T-CHM13v2.01158,308,647 - 158,340,339 (+)NCBIT2T-CHM13v2.0
Cadm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,161,825 - 173,195,214 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,160,825 - 173,195,261 (-)EnsemblGRCm39 Ensembl
GRCm381173,331,892 - 173,368,139 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,333,258 - 173,367,695 (-)EnsemblGRCm38mm10GRCm38
MGSCv371175,264,385 - 175,297,826 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361175,170,929 - 175,204,370 (-)NCBIMGSCv36mm8
Celera1176,183,311 - 176,218,109 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map180.33NCBI
Cadm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81388,317,124 - 88,349,718 (-)NCBIGRCr8
mRatBN7.21385,784,785 - 85,817,412 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1385,786,483 - 85,817,749 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1388,285,621 - 88,315,367 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01389,685,897 - 89,715,646 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01386,870,625 - 86,900,374 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01391,842,311 - 91,873,126 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1391,842,333 - 91,873,096 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01396,356,679 - 96,388,630 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41389,539,655 - 89,569,914 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11389,727,486 - 89,763,164 (-)NCBI
Celera1385,391,183 - 85,420,816 (-)NCBICelera
Cytogenetic Map13q24NCBI
Cadm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546810,963,724 - 10,994,266 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546810,963,773 - 10,994,266 (+)NCBIChiLan1.0ChiLan1.0
CADM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2190,654,051 - 90,683,717 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1190,390,584 - 90,420,952 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01134,522,614 - 134,552,959 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11138,319,952 - 138,351,606 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1138,319,952 - 138,350,307 (+)Ensemblpanpan1.1panPan2
CADM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13822,765,479 - 22,782,162 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3822,766,698 - 22,797,072 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3822,778,427 - 22,809,646 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03822,889,144 - 22,921,377 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3822,889,169 - 22,921,349 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13822,653,815 - 22,685,167 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03823,188,986 - 23,220,281 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03823,619,494 - 23,650,802 (-)NCBIUU_Cfam_GSD_1.0
CADM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl491,227,363 - 91,260,097 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1491,227,362 - 91,260,125 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2499,224,656 - 99,257,548 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CADM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1204,746,751 - 4,777,321 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl204,747,800 - 4,777,298 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660383,892,257 - 3,923,972 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cadm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247942,125,821 - 2,154,557 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247942,125,741 - 2,154,346 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000025615   ⟹   ENSSTOP00000016394
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367401,300,464 - 1,331,400 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000037793   ⟹   ENSSTOP00000024283
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367401,299,043 - 1,331,453 (-)Ensembl
RefSeq Acc Id: XM_005339393   ⟹   XP_005339450
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050585,423,134 - 5,453,750 (+)NCBI
SpeTri2.0NW_0049367401,298,512 - 1,331,376 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005339394   ⟹   XP_005339451
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050585,423,139 - 5,454,101 (+)NCBI
SpeTri2.0NW_0049367401,298,512 - 1,331,355 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005339450 (Get FASTA)   NCBI Sequence Viewer  
  XP_005339451 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016394.2
  ENSSTOP00000024283.1
GenBank Protein KAG3281016 (Get FASTA)   NCBI Sequence Viewer  
  KAG3281017 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005339450   ⟸   XM_005339393
- Peptide Label: isoform X1
- UniProtKB: A0A287CSP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005339451   ⟸   XM_005339394
- Peptide Label: isoform X2
- UniProtKB: I3MW99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000024283   ⟸   ENSSTOT00000037793
RefSeq Acc Id: ENSSTOP00000016394   ⟸   ENSSTOT00000025615
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025214 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025615.2 UniProtKB/TrEMBL
  ENSSTOT00000037793.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD80_C2-set UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Neurexin-like UniProtKB/TrEMBL
NCBI Gene Cadm3 ENTREZGENE
PANTHER CELL ADHESION MOLECULE 3 UniProtKB/TrEMBL
  IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam C2-set_2 UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART 4.1m UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A287CSP2 ENTREZGENE, UniProtKB/TrEMBL
  I3MW99 ENTREZGENE, UniProtKB/TrEMBL