LOC101967786 (L-xylulose reductase) - Rat Genome Database

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Gene: LOC101967786 (L-xylulose reductase) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101967786 (Ensembl: DCXR)
Name: L-xylulose reductase
RGD ID: 12718958
Description: ENCODES a protein that exhibits identical protein binding (inferred); L-xylulose reductase (NADP+) activity (inferred); oxidoreductase activity (inferred); INVOLVED IN NADP metabolic process (ortholog); xylulose metabolic process (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); obesity (ortholog); pentosuria (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Dcxr; dicarbonyl and L-xylulose reductase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602877,786 - 879,695 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,531,560 - 5,538,105 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365945,532,264 - 5,534,129 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
LOC101967786
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602877,786 - 879,695 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,531,560 - 5,538,105 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365945,532,264 - 5,534,129 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCXR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,035,858 - 82,037,697 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1782,035,136 - 82,037,709 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,993,734 - 79,995,573 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,587,046 - 77,588,862 (-)NCBINCBI36Build 36hg18NCBI36
Build 341777,587,045 - 77,588,862NCBI
Celera1776,587,448 - 76,589,264 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,393,877 - 75,395,693 (-)NCBIHuRef
CHM1_11780,079,960 - 80,081,776 (-)NCBICHM1_1
T2T-CHM13v2.01782,903,016 - 82,904,855 (-)NCBIT2T-CHM13v2.0
Dcxr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,615,372 - 120,618,110 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,616,225 - 120,618,107 (-)EnsemblGRCm39 Ensembl
GRCm3811120,724,546 - 120,727,284 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,725,399 - 120,727,281 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,586,687 - 120,588,595 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,541,491 - 120,543,370 (-)NCBIMGSCv36mm8
Celera11132,460,832 - 132,462,740 (-)NCBICelera
Cytogenetic Map11E2NCBI
Dcxr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210106,006,404 - 106,008,294 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx10111,110,399 - 111,112,288 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.010110,573,434 - 110,575,323 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.010105,926,854 - 105,928,743 (-)NCBIRnor_WKY
Rnor_6.010109,906,119 - 109,909,696 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,906,815 - 109,909,715 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,499,388 - 109,501,278 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10104,550,346 - 104,552,236 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
DCXR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11782,145,224 - 82,147,257 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,145,224 - 82,147,257 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01776,439,645 - 76,442,282 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
DCXR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19289,864 - 291,518 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9289,889 - 291,480 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9891,671 - 893,706 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09882,891 - 884,926 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9882,938 - 884,888 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19908,059 - 910,094 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,034,747 - 1,036,782 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,113,334 - 1,115,369 (+)NCBIUU_Cfam_GSD_1.0
CBR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12973,760 - 976,017 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112973,780 - 976,017 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DCXR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,923,170 - 73,925,025 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,919,463 - 73,925,277 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,390,184 - 45,392,044 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dcxr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,865,219 - 10,868,060 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,866,264 - 10,868,064 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005332685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000007327   ⟹   ENSSTOP00000006545
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365945,536,019 - 5,538,105 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000023235   ⟹   ENSSTOP00000018955
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365945,532,329 - 5,534,093 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000030200   ⟹   ENSSTOP00000029454
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365945,531,560 - 5,538,105 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000035542   ⟹   ENSSTOP00000030167
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365945,531,560 - 5,534,184 (-)Ensembl
RefSeq Acc Id: XM_005332685   ⟹   XP_005332742
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405602877,786 - 879,695 (+)NCBI
SpeTri2.0NW_0049365945,532,264 - 5,534,129 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005332742 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3268251 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005332742   ⟸   XM_005332685
- UniProtKB: A0A287D9C5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000030167   ⟸   ENSSTOT00000035542
RefSeq Acc Id: ENSSTOP00000029454   ⟸   ENSSTOT00000030200
RefSeq Acc Id: ENSSTOP00000018955   ⟸   ENSSTOT00000023235
RefSeq Acc Id: ENSSTOP00000006545   ⟸   ENSSTOT00000007327


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028714 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000018955.2 UniProtKB/TrEMBL
  ENSSTOP00000029454.1 UniProtKB/TrEMBL
  ENSSTOP00000030167 ENTREZGENE
  ENSSTOP00000030167.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023235.2 UniProtKB/TrEMBL
  ENSSTOT00000030200.1 UniProtKB/TrEMBL
  ENSSTOT00000035542.1 UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  Sc_DH/Rdtase_CS UniProtKB/TrEMBL
  SDR_fam UniProtKB/TrEMBL
NCBI Gene Dcxr ENTREZGENE
Pfam adh_short UniProtKB/TrEMBL
PRINTS GDHRDH UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/TrEMBL
PROSITE ADH_SHORT UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A287D7E0_ICTTR UniProtKB/TrEMBL
  A0A287D9C5 ENTREZGENE, UniProtKB/TrEMBL
  I3N3K9_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 LOC101967786  L-xylulose reductase  Dcxr  dicarbonyl and L-xylulose reductase  Symbol and/or name change 5135510 APPROVED