LOC101962840 (WD repeat containing planar cell polarity effector) - Rat Genome Database

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Gene: LOC101962840 (WD repeat containing planar cell polarity effector) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101962840
Name: WD repeat containing planar cell polarity effector
RGD ID: 12717636
Description: INVOLVED IN auditory receptor cell morphogenesis (ortholog); camera-type eye development (ortholog); cilium assembly (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 1 (ortholog); Bardet-Biedl syndrome 15 (ortholog); FOUND IN axonemal basal plate (inferred); cell projection (inferred); cilium (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat containing planar cell polarity effector, transcript variant X1; WD repeat containing planar cell polarity effector, transcript variant X2; WD repeat containing planar cell polarity effector, transcript variant X3; WD repeat containing planar cell polarity effector, transcript variant X4; WD repeat containing planar cell polarity effector, transcript variant X5; WD repeat-containing and planar cell polarity effector protein fritz homolog; Wdpcp
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629220,000,470 - 20,334,532 (+)NCBI
SpeTri2.0NW_0049364918,238,644 - 8,749,172 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC101962840
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629220,000,470 - 20,334,532 (+)NCBI
SpeTri2.0NW_0049364918,238,644 - 8,749,172 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDPCP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38263,119,559 - 63,840,826 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl263,119,559 - 63,827,843 (-)EnsemblGRCh38hg38GRCh38
GRCh37263,346,694 - 63,815,611 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36263,202,022 - 63,669,355 (-)NCBINCBI36hg18NCBI36
Celera263,193,063 - 63,660,892 (-)NCBI
Cytogenetic Map2p15NCBI
HuRef263,087,448 - 63,556,897 (-)NCBIHuRef
CHM1_1263,278,766 - 63,746,004 (-)NCBICHM1_1
Wdpcp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391121,521,969 - 21,848,686 (+)NCBIGRCm39mm39
GRCm39 Ensembl1121,522,235 - 21,848,989 (+)Ensembl
GRCm381121,571,969 - 21,898,687 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1121,572,235 - 21,898,989 (+)EnsemblGRCm38mm10GRCm38
MGSCv371121,472,284 - 21,798,689 (+)NCBIGRCm37mm9NCBIm37
MGSCv361121,472,284 - 21,798,689 (+)NCBImm8
Celera1123,720,548 - 24,045,720 (+)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.9NCBI
Wdpcp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21495,645,955 - 95,977,120 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1495,646,038 - 95,977,113 (+)Ensembl
Rnor_6.014106,393,959 - 106,759,511 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14106,393,959 - 106,759,505 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014106,464,351 - 106,823,523 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414102,274,144 - 102,612,376 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.114102,385,822 - 102,631,969 (+)NCBI
Celera1494,655,473 - 94,975,636 (+)NCBICelera
Cytogenetic Map14q22NCBI
Wdpcp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542420,723,592 - 21,114,801 (+)NCBIChiLan1.0ChiLan1.0
WDPCP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A64,323,118 - 64,785,322 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A64,325,379 - 64,785,256 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A63,180,279 - 63,658,804 (-)NCBIMhudiblu_PPA_v0panPan3
WDPCP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11062,894,818 - 63,316,555 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1062,877,527 - 63,316,345 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1062,782,163 - 63,206,565 (-)NCBI
ROS_Cfam_1.01063,901,715 - 64,326,640 (-)NCBI
ROS_Cfam_1.0 Ensembl1063,884,301 - 64,325,262 (-)Ensembl
UMICH_Zoey_3.11063,584,532 - 64,009,171 (-)NCBI
UNSW_CanFamBas_1.01063,888,001 - 64,317,400 (-)NCBI
UU_Cfam_GSD_1.01064,185,201 - 64,609,983 (-)NCBI
WDPCP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1378,435,154 - 78,726,313 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2382,738,390 - 82,792,999 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103220174
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11443,425,405 - 43,896,015 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1443,526,525 - 43,898,300 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604567,944,581 - 68,435,636 (-)NCBIVero_WHO_p1.0
Wdpcp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247629,901,021 - 10,303,217 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013357181   ⟹   XP_013212635
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629220,000,470 - 20,334,532 (+)NCBI
SpeTri2.0NW_0049364918,238,644 - 8,570,528 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040270809   ⟹   XP_040126743
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629220,000,470 - 20,331,032 (+)NCBI
RefSeq Acc Id: XM_040270810   ⟹   XP_040126744
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629220,003,486 - 20,331,033 (+)NCBI
RefSeq Acc Id: XM_040270811   ⟹   XP_040126745
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629220,000,470 - 20,331,033 (+)NCBI
RefSeq Acc Id: XM_040270812   ⟹   XP_040126746
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629220,000,470 - 20,331,033 (+)NCBI
RefSeq Acc Id: XM_040270813   ⟹   XP_040126747
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629220,092,338 - 20,331,033 (+)NCBI
RefSeq Acc Id: XM_040270814   ⟹   XP_040126748
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629220,000,470 - 20,294,472 (+)NCBI
RefSeq Acc Id: XM_040270815   ⟹   XP_040126749
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629220,000,470 - 20,294,458 (+)NCBI
RefSeq Acc Id: XR_005727190
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629220,000,470 - 20,255,884 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_013212635   ⟸   XM_013357181
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_040126745   ⟸   XM_040270811
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040126746   ⟸   XM_040270812
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040126743   ⟸   XM_040270809
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040126748   ⟸   XM_040270814
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040126749   ⟸   XM_040270815
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040126744   ⟸   XM_040270810
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040126747   ⟸   XM_040270813
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014213 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000012735 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014219 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Frtz UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Wdpcp ENTREZGENE
PANTHER PTHR13667 UniProtKB/TrEMBL
Pfam Frtz UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt I3MMH3_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101962840  WD repeat containing planar cell polarity effector  Wdpcp  WD repeat containing planar cell polarity effector  Symbol and/or name change 5135510 APPROVED