Psmb10 (proteasome 20S subunit beta 10) - Rat Genome Database

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Gene: Psmb10 (proteasome 20S subunit beta 10) Ictidomys tridecemlineatus
Analyze
Symbol: Psmb10
Name: proteasome 20S subunit beta 10
RGD ID: 12717171
Description: ENCODES a protein that exhibits threonine-type endopeptidase activity (inferred); INVOLVED IN cell morphogenesis (ortholog); T cell proliferation (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred); proteasome complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proteasome subunit beta 10; proteasome subunit beta type-10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,296,032 - 41,299,059 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,290,077 - 18,292,544 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,290,055 - 18,293,035 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Psmb10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,296,032 - 41,299,059 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,290,077 - 18,292,544 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,290,055 - 18,293,035 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMB10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,934,506 - 67,936,850 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,934,506 - 67,936,864 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,968,409 - 67,970,753 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,525,908 - 66,528,254 (-)NCBINCBI36Build 36hg18NCBI36
Build 341666,525,907 - 66,528,254NCBI
Celera1652,476,864 - 52,479,210 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,841,977 - 53,844,350 (-)NCBIHuRef
CHM1_11669,376,471 - 69,378,844 (-)NCBICHM1_1
T2T-CHM13v2.01673,730,280 - 73,732,624 (-)NCBIT2T-CHM13v2.0
Psmb10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,662,360 - 106,665,024 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,662,367 - 106,665,076 (-)EnsemblGRCm39 Ensembl
GRCm388105,935,728 - 105,938,392 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,935,735 - 105,938,444 (-)EnsemblGRCm38mm10GRCm38
MGSCv378108,459,628 - 108,462,292 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,824,893 - 108,827,234 (-)NCBIMGSCv36mm8
Celera8110,163,776 - 110,166,440 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.06NCBI
Psmb10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,740,808 - 50,743,292 (-)NCBIGRCr8
mRatBN7.21933,830,958 - 33,833,442 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,827,229 - 33,833,626 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,646,494 - 40,648,978 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,299,809 - 41,302,293 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,598,358 - 43,600,829 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,909,543 - 37,912,027 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,909,546 - 37,912,027 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,776,574 - 48,779,058 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,777,710 - 35,780,194 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,763,530 - 35,785,075 (-)NCBI
Celera1933,258,507 - 33,260,991 (-)NCBICelera
Cytogenetic Map19q12NCBI
Psmb10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554848,777,621 - 8,780,320 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554848,777,618 - 8,780,393 (+)NCBIChiLan1.0ChiLan1.0
PSMB10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,461,054 - 77,463,374 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11683,372,482 - 83,374,805 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01648,275,764 - 48,278,108 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,663,344 - 67,666,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,663,344 - 67,666,359 (-)Ensemblpanpan1.1panPan2
PSMB10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,560,750 - 81,563,571 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,561,056 - 81,563,564 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,551,024 - 81,553,555 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0581,996,365 - 81,998,896 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl581,996,380 - 81,998,889 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1581,822,575 - 81,825,106 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,504,707 - 81,507,236 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,146,923 - 82,149,454 (+)NCBIUU_Cfam_GSD_1.0
PSMB10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,543,972 - 28,548,152 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,544,910 - 28,547,609 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap6p14-p15NCBI
PSMB10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,502,616 - 59,505,584 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl559,503,246 - 59,505,521 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604722,227,805 - 22,230,927 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmb10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,442,478 - 18,445,731 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,442,865 - 18,445,731 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000002007   ⟹   ENSSTOP00000001787
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647518,290,077 - 18,292,544 (-)Ensembl
RefSeq Acc Id: XM_040279788   ⟹   XP_040135722
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934941,296,032 - 41,299,059 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040135722 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000001787.3
GenBank Protein KAG3256999 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040135722   ⟸   XM_040279788
- UniProtKB: I3LZL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000001787   ⟸   ENSSTOT00000002007
Protein Domains
Proteasome beta subunit C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002011 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002007.3 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/TrEMBL
  Pept_T1A_subB UniProtKB/TrEMBL
  Proteasome_bsu_C UniProtKB/TrEMBL
  Proteasome_bsu_CS UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/TrEMBL
  Proteasome_suB-type UniProtKB/TrEMBL
NCBI Gene Psmb10 ENTREZGENE
PANTHER METALLOPROTEASE TLDD UniProtKB/TrEMBL
  PROTEASOME SUBUNIT BETA TYPE-7 UniProtKB/TrEMBL
Pfam Pr_beta_C UniProtKB/TrEMBL
  Proteasome UniProtKB/TrEMBL
PRINTS PROTEASOME UniProtKB/TrEMBL
PROSITE PROTEASOME_BETA_1 UniProtKB/TrEMBL
  PROTEASOME_BETA_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/TrEMBL
UniProt I3LZL3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-03 Psmb10  proteasome 20S subunit beta 10  Psmb10  proteasome subunit beta 10  Symbol and/or name change 5135510 APPROVED