Kif1c (kinesin family member 1C) - Rat Genome Database

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Gene: Kif1c (kinesin family member 1C) Ictidomys tridecemlineatus
Analyze
Symbol: Kif1c
Name: kinesin family member 1C
RGD ID: 12716555
Description: ENCODES a protein that exhibits ATP binding (inferred); cytoskeletal motor activity (inferred); microtubule binding (inferred); INVOLVED IN anterograde neuronal dense core vesicle transport (ortholog); retrograde neuronal dense core vesicle transport (ortholog); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); congenital myasthenic syndrome 4A (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinesin-like protein KIF1C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,180,016 - 53,204,590 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,696,209 - 2,720,959 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,696,385 - 2,720,959 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Kif1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,180,016 - 53,204,590 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,696,209 - 2,720,959 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,696,385 - 2,720,959 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,997,950 - 5,028,401 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,997,950 - 5,028,401 (+)EnsemblGRCh38hg38GRCh38
GRCh37174,901,245 - 4,931,696 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,841,998 - 4,868,720 (+)NCBINCBI36Build 36hg18NCBI36
Build 34174,841,999 - 4,868,720NCBI
Celera174,916,054 - 4,946,508 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef174,789,123 - 4,819,525 (+)NCBIHuRef
CHM1_1174,910,557 - 4,941,008 (+)NCBICHM1_1
T2T-CHM13v2.0174,888,274 - 4,918,727 (+)NCBIT2T-CHM13v2.0
Kif1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,591,170 - 70,622,796 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,591,374 - 70,622,790 (+)EnsemblGRCm39 Ensembl
GRCm381170,700,396 - 70,731,970 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,700,548 - 70,731,964 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,514,050 - 70,545,472 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,518,995 - 70,545,074 (+)NCBIMGSCv36mm8
Celera1178,251,472 - 78,282,892 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1143.21NCBI
Kif1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,913,010 - 55,942,220 (+)NCBIGRCr8
mRatBN7.21055,414,412 - 55,444,587 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,415,900 - 55,443,545 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,094,995 - 60,124,344 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,583,507 - 59,612,860 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,082,608 - 55,111,959 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,322,259 - 57,352,395 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,322,331 - 57,351,353 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,067,764 - 57,097,528 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,580,646 - 57,622,517 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,594,268 - 57,636,139 (+)NCBI
Celera1054,559,969 - 54,589,678 (+)NCBICelera
Cytogenetic Map10q24NCBI
Kif1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,399,768 - 10,422,712 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,399,768 - 10,423,249 (+)NCBIChiLan1.0ChiLan1.0
KIF1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21912,608,356 - 12,635,096 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11714,576,729 - 14,603,468 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,046,488 - 5,073,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,035,014 - 5,061,957 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,035,014 - 5,061,957 (+)Ensemblpanpan1.1panPan2
KIF1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,613,335 - 31,635,313 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,613,398 - 31,633,736 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,751,844 - 31,773,973 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,717,236 - 31,739,368 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,717,299 - 31,737,640 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,683,805 - 31,705,933 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,643,532 - 31,665,655 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,819,860 - 31,841,999 (-)NCBIUU_Cfam_GSD_1.0
KIF1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,897,494 - 51,924,432 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,899,762 - 51,924,465 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21253,968,351 - 53,993,120 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIF1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,478,315 - 4,502,261 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605917,129,946 - 17,155,908 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kif1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247868,845,033 - 8,869,577 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247868,845,352 - 8,868,681 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005337344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000012582   ⟹   ENSSTOP00000011275
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366772,696,918 - 2,718,759 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000038055   ⟹   ENSSTOP00000026956
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366772,696,209 - 2,720,959 (-)Ensembl
RefSeq Acc Id: XM_005337344   ⟹   XP_005337401
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560253,180,016 - 53,204,590 (+)NCBI
SpeTri2.0NW_0049366772,696,385 - 2,720,959 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337401 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011275.3
  ENSSTOP00000026956.1
GenBank Protein KAG3270085 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005337401   ⟸   XM_005337344
- UniProtKB: A0A287D0A6 (UniProtKB/TrEMBL),   I3MJF2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000011275   ⟸   ENSSTOT00000012582
Ensembl Acc Id: ENSSTOP00000026956   ⟸   ENSSTOT00000038055
Protein Domains
Kinesin motor


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012573 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012582.3 UniProtKB/TrEMBL
  ENSSTOT00000038055.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
  6.10.250.2520 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
NCBI Gene Kif1c ENTREZGENE
PANTHER KINESIN-LIKE PROTEIN KIF1C ISOFORM X1 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  Kinesin UniProtKB/TrEMBL
  Kinesin_assoc UniProtKB/TrEMBL
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A287D0A6 ENTREZGENE, UniProtKB/TrEMBL
  I3MJF2 ENTREZGENE, UniProtKB/TrEMBL