Acacb (acetyl-CoA carboxylase beta) - Rat Genome Database

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Gene: Acacb (acetyl-CoA carboxylase beta) Ictidomys tridecemlineatus
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Symbol: Acacb
Name: acetyl-CoA carboxylase beta
RGD ID: 12716148
Description: ENCODES a protein that exhibits acetyl-CoA carboxylase activity (ortholog); biotin binding (ortholog); identical protein binding (ortholog); INVOLVED IN acetyl-CoA metabolic process (ortholog); energy homeostasis (ortholog); fatty acid biosynthetic process (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); fatty liver disease (ortholog); immunodeficiency with hyper IgM type 5 (ortholog); FOUND IN mitochondrion (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: acetyl-CoA carboxylase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118144,422,223 - 144,525,063 (-)NCBI
SpeTri2.0NW_004936769950,970 - 1,053,671 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Acacb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118144,422,223 - 144,525,063 (-)NCBI
SpeTri2.0NW_004936769950,970 - 1,053,671 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACACB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12109,116,595 - 109,268,226 (+)EnsemblGRCh38hg38GRCh38
GRCh3812109,112,666 - 109,268,226 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712109,554,392 - 109,706,031 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612108,061,585 - 108,190,414 (+)NCBINCBI36hg18NCBI36
Build 3412108,039,930 - 108,166,887NCBI
Celera12109,201,352 - 109,330,479 (+)NCBI
Cytogenetic Map12q24.11NCBI
HuRef12106,595,722 - 106,724,234 (+)NCBIHuRef
CHM1_112109,544,852 - 109,673,937 (+)NCBICHM1_1
Acacb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,284,378 - 114,388,822 (+)NCBIGRCm39mm39
GRCm39 Ensembl5114,284,596 - 114,388,822 (+)Ensembl
GRCm385114,146,321 - 114,250,761 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,146,535 - 114,250,761 (+)EnsemblGRCm38mm10GRCm38
MGSCv375114,615,527 - 114,700,767 (+)NCBIGRCm37mm9NCBIm37
MGSCv365114,426,517 - 114,510,733 (+)NCBImm8
Celera5111,267,324 - 111,357,484 (+)NCBICelera
Cytogenetic Map5FNCBI
Acacb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21242,365,800 - 42,477,651 (-)NCBI
Rnor_6.0 Ensembl1248,127,149 - 48,238,887 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01248,127,149 - 48,238,969 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01249,914,427 - 50,000,957 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,388,679 - 43,492,993 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11243,252,066 - 43,356,381 (-)NCBI
Celera1243,976,897 - 44,062,163 (-)NCBICelera
Cytogenetic Map12q16NCBI
Acacb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545510,308,192 - 10,426,076 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545510,282,308 - 10,427,439 (+)NCBIChiLan1.0ChiLan1.0
ACACB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112110,086,374 - 110,239,847 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12110,086,374 - 110,239,847 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012106,692,668 - 106,845,490 (+)NCBIMhudiblu_PPA_v0panPan3
ACACB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12617,763,531 - 17,895,319 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2617,747,362 - 17,894,400 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2617,906,250 - 18,037,960 (+)NCBI
ROS_Cfam_1.02618,106,936 - 18,239,349 (-)NCBI
UMICH_Zoey_3.12618,115,480 - 18,247,107 (+)NCBI
UNSW_CanFamBas_1.02618,097,758 - 18,229,980 (-)NCBI
UU_Cfam_GSD_1.02618,116,847 - 18,248,772 (-)NCBI
ACACB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11441,621,574 - 41,739,916 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21444,153,373 - 44,271,216 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACACB
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111104,325,250 - 104,488,567 (+)NCBI
ChlSab1.1 Ensembl11104,349,573 - 104,488,003 (+)Ensembl
Acacb
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474712,287,817 - 12,426,340 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021720021   ⟹   XP_021575696
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_004936769950,970 - 1,053,671 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040290933   ⟹   XP_040146867
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118144,422,223 - 144,525,063 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040146867 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_021575696   ⟸   XM_021720021
- Sequence:
RefSeq Acc Id: XP_040146867   ⟸   XM_040290933

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004947 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000004516 UniProtKB/TrEMBL
  ENSSTOP00000024677 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005035 UniProtKB/TrEMBL
  ENSSTOT00000032973 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1490.20 UniProtKB/TrEMBL
InterPro AcCoA_carboxyl UniProtKB/TrEMBL
  AcCoA_COase_cen UniProtKB/TrEMBL
  ATP-grasp UniProtKB/TrEMBL
  ATP_grasp_subdomain_1 UniProtKB/TrEMBL
  BC-like_N UniProtKB/TrEMBL
  Biotin_carboxylation_dom UniProtKB/TrEMBL
  Biotin_COase_C UniProtKB/TrEMBL
  Biotin_lipoyl UniProtKB/TrEMBL
  CbamoylP_synth_lsu-like_ATP-bd UniProtKB/TrEMBL
  ClpP/crotonase-like_dom_sf UniProtKB/TrEMBL
  COA_CT_C UniProtKB/TrEMBL
  COA_CT_N UniProtKB/TrEMBL
  PreATP-grasp_dom_sf UniProtKB/TrEMBL
  Rudment_hybrid_motif UniProtKB/TrEMBL
  Single_hybrid_motif UniProtKB/TrEMBL
NCBI Gene Acacb ENTREZGENE
Pfam ACC_central UniProtKB/TrEMBL
  Biotin_carb_N UniProtKB/TrEMBL
  Biotin_lipoyl UniProtKB/TrEMBL
  Carboxyl_trans UniProtKB/TrEMBL
  CPSase_L_D2 UniProtKB/TrEMBL
PROSITE ATP_GRASP UniProtKB/TrEMBL
  BIOTINYL_LIPOYL UniProtKB/TrEMBL
  COA_CT_CTER UniProtKB/TrEMBL
  COA_CT_NTER UniProtKB/TrEMBL
  CPSASE_1 UniProtKB/TrEMBL
  CPSASE_2 UniProtKB/TrEMBL
  PS50979 UniProtKB/TrEMBL
SMART Biotin_carb_C UniProtKB/TrEMBL
Superfamily-SCOP SSF51230 UniProtKB/TrEMBL
  SSF51246 UniProtKB/TrEMBL
  SSF52096 UniProtKB/TrEMBL
  SSF52440 UniProtKB/TrEMBL
UniProt A0A287CTR4_ICTTR UniProtKB/TrEMBL
  I3M5C3_ICTTR UniProtKB/TrEMBL