Plxna1 (plexin A1) - Rat Genome Database

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Gene: Plxna1 (plexin A1) Ictidomys tridecemlineatus
Analyze
Symbol: Plxna1
Name: plexin A1
RGD ID: 12715689
Description: ENCODES a protein that exhibits semaphorin receptor activity (inferred); INVOLVED IN dichotomous subdivision of terminal units involved in salivary gland branching (ortholog); neuron projection extension (ortholog); neuron projection guidance (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); DWORSCHAK-PUNETHA NEURODEVELOPMENTAL SYNDROME (ortholog); epilepsy (ortholog); FOUND IN glutamatergic synapse (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: plexin-A1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,909,273 - 20,948,097 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936798952,428 - 989,894 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936798951,138 - 989,955 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Plxna1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,909,273 - 20,948,097 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936798952,428 - 989,894 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936798951,138 - 989,955 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLXNA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383126,983,115 - 127,037,389 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3126,982,693 - 127,037,389 (+)EnsemblGRCh38hg38GRCh38
GRCh373126,701,958 - 126,756,232 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363128,190,192 - 128,238,922 (+)NCBINCBI36Build 36hg18NCBI36
Build 343128,190,199 - 128,238,926NCBI
Celera3125,131,626 - 125,180,424 (+)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3124,086,407 - 124,135,205 (+)NCBIHuRef
CHM1_13126,670,452 - 126,719,250 (+)NCBICHM1_1
T2T-CHM13v2.03129,715,295 - 129,769,569 (+)NCBIT2T-CHM13v2.0
Plxna1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39689,293,295 - 89,339,595 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl689,293,296 - 89,339,602 (-)EnsemblGRCm39 Ensembl
GRCm38689,316,313 - 89,362,613 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl689,316,314 - 89,362,620 (-)EnsemblGRCm38mm10GRCm38
MGSCv37689,266,307 - 89,312,607 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36689,284,498 - 89,328,239 (-)NCBIMGSCv36mm8
Celera691,240,510 - 91,288,949 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.91NCBI
Plxna1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84123,295,165 - 123,340,132 (-)NCBIGRCr8
mRatBN7.24121,737,934 - 121,782,901 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4121,737,945 - 122,024,196 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.04121,217,658 - 121,262,697 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4121,217,629 - 121,257,885 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04186,455,209 - 186,500,246 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44123,395,675 - 123,432,697 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4110,688,907 - 110,729,767 (-)NCBICelera
Cytogenetic Map4q34NCBI
Plxna1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542916,482,725 - 16,522,973 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542916,482,821 - 16,522,978 (-)NCBIChiLan1.0ChiLan1.0
PLXNA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22124,906,640 - 124,960,914 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13124,911,421 - 124,965,696 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03124,026,069 - 124,080,241 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13131,340,943 - 131,393,561 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3131,340,584 - 131,393,561 (+)Ensemblpanpan1.1panPan2
PLXNA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1201,143,072 - 1,186,623 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl20870,870 - 1,184,321 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha201,177,044 - 1,220,424 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0201,154,683 - 1,198,065 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl20882,518 - 1,198,061 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.120882,240 - 925,612 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0201,210,685 - 1,254,044 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0201,170,302 - 1,213,686 (+)NCBIUU_Cfam_GSD_1.0
PLXNA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1373,054,443 - 73,094,623 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11373,054,434 - 73,098,786 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21380,508,136 - 80,608,330 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLXNA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12253,949,566 - 54,005,626 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2253,951,119 - 53,999,812 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041112,277,639 - 112,332,742 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plxna1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249002,784,106 - 2,825,360 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249002,779,008 - 2,825,263 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000023657   ⟹   ENSSTOP00000015753
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936798952,428 - 989,894 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000033344   ⟹   ENSSTOP00000028934
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936798952,428 - 989,894 (-)Ensembl
RefSeq Acc Id: XM_040291610   ⟹   XP_040147544
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494220,909,273 - 20,948,097 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040147544 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015753.2
  ENSSTOP00000028934.1
GenBank Protein KAG3295211 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040147544   ⟸   XM_040291610
- UniProtKB: I3MUF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000015753   ⟸   ENSSTOT00000023657
RefSeq Acc Id: ENSSTOP00000028934   ⟸   ENSSTOT00000033344
Protein Domains
Sema


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026715 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023657.2 UniProtKB/TrEMBL
  ENSSTOT00000033344.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  IPT_dom UniProtKB/TrEMBL
  Plexin UniProtKB/TrEMBL
  Plexin_cytoplasmic_RasGAP_dom UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  Semap_dom UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/TrEMBL
  TIG1_plexin UniProtKB/TrEMBL
  TIG2_plexin UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Plxna1 ENTREZGENE
PANTHER PLEXIN-A1 UniProtKB/TrEMBL
  PTHR22625 UniProtKB/TrEMBL
Pfam Plexin_cytopl UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
  TIG UniProtKB/TrEMBL
  TIG_2 UniProtKB/TrEMBL
  TIG_plexin UniProtKB/TrEMBL
PROSITE SEMA UniProtKB/TrEMBL
SMART IPT UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
Superfamily-SCOP Plexin repeat UniProtKB/TrEMBL
  SSF101912 UniProtKB/TrEMBL
  SSF48350 UniProtKB/TrEMBL
  SSF81296 UniProtKB/TrEMBL
UniProt A0A287D5V9_ICTTR UniProtKB/TrEMBL
  I3MUF8 ENTREZGENE, UniProtKB/TrEMBL