Cc2d1b (coiled-coil and C2 domain containing 1B) - Rat Genome Database

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Gene: Cc2d1b (coiled-coil and C2 domain containing 1B) Ictidomys tridecemlineatus
Analyze
Symbol: Cc2d1b
Name: coiled-coil and C2 domain containing 1B
RGD ID: 12715173
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); DNA-binding transcription repressor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of Notch signaling pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (inferred); endosome membrane (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil and C2 domain containing 1B, transcript variant X1; coiled-coil and C2 domain containing 1B, transcript variant X2; coiled-coil and C2 domain containing 1B, transcript variant X3; coiled-coil and C2 domain-containing protein 1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505866,786,975 - 66,802,501 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365228,615,459 - 8,645,795 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365228,613,766 - 8,644,714 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cc2d1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505866,786,975 - 66,802,501 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365228,615,459 - 8,645,795 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365228,613,766 - 8,644,714 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CC2D1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38152,350,597 - 52,366,205 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl152,345,723 - 52,366,205 (-)EnsemblGRCh38hg38GRCh38
GRCh37152,816,269 - 52,831,877 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36152,588,855 - 52,604,452 (-)NCBINCBI36Build 36hg18NCBI36
Celera151,102,961 - 51,118,558 (-)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef150,932,267 - 50,947,880 (-)NCBIHuRef
CHM1_1152,933,642 - 52,949,254 (-)NCBICHM1_1
T2T-CHM13v2.0152,232,062 - 52,247,670 (-)NCBIT2T-CHM13v2.0
Cc2d1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394108,477,105 - 108,495,801 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4108,477,137 - 108,491,320 (+)EnsemblGRCm39 Ensembl
GRCm384108,619,940 - 108,638,604 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4108,619,940 - 108,634,123 (+)EnsemblGRCm38mm10GRCm38
MGSCv374108,292,561 - 108,306,727 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364108,117,888 - 108,132,054 (+)NCBIMGSCv36mm8
Celera4106,964,140 - 106,978,308 (+)NCBICelera
Cytogenetic Map4C7NCBI
cM Map450.64NCBI
Cc2d1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85128,581,962 - 128,596,045 (+)NCBIGRCr8
mRatBN7.25123,353,289 - 123,367,343 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5123,353,292 - 123,367,318 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5125,976,084 - 125,990,134 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05127,699,168 - 127,713,218 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05127,750,462 - 127,764,512 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05128,215,711 - 128,229,762 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5128,215,711 - 128,229,737 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05132,056,222 - 132,070,273 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45129,906,965 - 129,920,984 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15129,913,613 - 129,925,368 (+)NCBI
Celera5122,087,913 - 122,101,964 (+)NCBICelera
Cytogenetic Map5q34NCBI
Cc2d1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554646,794,125 - 6,804,404 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554646,792,456 - 6,805,284 (+)NCBIChiLan1.0ChiLan1.0
CC2D1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21174,482,926 - 174,501,298 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11173,629,385 - 173,647,381 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0151,608,126 - 51,623,748 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1153,218,432 - 53,231,795 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl153,218,432 - 53,231,795 (-)Ensemblpanpan1.1panPan2
CC2D1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1158,998,473 - 9,013,289 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl158,999,382 - 9,013,300 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha159,150,359 - 9,165,392 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0159,121,520 - 9,136,460 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl159,121,607 - 9,136,387 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1158,934,519 - 8,949,059 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0159,023,456 - 9,038,543 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0159,041,366 - 9,056,183 (+)NCBIUU_Cfam_GSD_1.0
CC2D1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6159,854,593 - 159,872,015 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16159,854,280 - 159,872,363 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26147,514,731 - 147,525,988 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CC2D1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12080,577,385 - 80,591,018 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2080,577,725 - 80,590,046 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603336,671,666 - 36,692,878 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cc2d1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624859866,824 - 877,264 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624859865,270 - 900,288 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000015589   ⟹   ENSSTOP00000013952
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365228,615,476 - 8,626,516 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000031686   ⟹   ENSSTOP00000032094
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365228,615,459 - 8,645,795 (+)Ensembl
RefSeq Acc Id: XM_013358960   ⟹   XP_013214414
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505866,786,975 - 66,802,501 (-)NCBI
SpeTri2.0NW_0049365228,613,766 - 8,629,319 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021726838   ⟹   XP_021582513
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505866,786,975 - 66,802,501 (-)NCBI
SpeTri2.0NW_0049365228,613,766 - 8,629,319 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013214414 (Get FASTA)   NCBI Sequence Viewer  
  XP_021582513 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013952.3
  ENSSTOP00000032094.1
GenBank Protein KAG3283172 (Get FASTA)   NCBI Sequence Viewer  
  KAG3283173 (Get FASTA)   NCBI Sequence Viewer  
  KAG3283174 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013214414   ⟸   XM_013358960
- UniProtKB: A0A287DEY3 (UniProtKB/TrEMBL),   I3MQ01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582513   ⟸   XM_021726838
- UniProtKB: A0A287DEY3 (UniProtKB/TrEMBL),   I3MQ01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000013952   ⟸   ENSSTOT00000015589
RefSeq Acc Id: ENSSTOP00000032094   ⟸   ENSSTOT00000031686
Protein Domains
C2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015584 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015589.3 UniProtKB/TrEMBL
  ENSSTOT00000031686.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  C2_Freud UniProtKB/TrEMBL
  CC2D1A/B UniProtKB/TrEMBL
  DM14 UniProtKB/TrEMBL
NCBI Gene Cc2d1b ENTREZGENE
PANTHER COILED-COIL AND C2 DOMAIN-CONTAINING PROTEIN 1B UniProtKB/TrEMBL
  PTHR13076 UniProtKB/TrEMBL
Pfam CC2D1A-B_DM14 UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
SMART DM14 UniProtKB/TrEMBL
  SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A287DEY3 ENTREZGENE, UniProtKB/TrEMBL
  I3MQ01 ENTREZGENE, UniProtKB/TrEMBL