Rsph9 (radial spoke head component 9) - Rat Genome Database

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Gene: Rsph9 (radial spoke head component 9) Ictidomys tridecemlineatus
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Symbol: Rsph9
Name: radial spoke head component 9
RGD ID: 12714420
Description: INVOLVED IN axonemal central apparatus assembly (inferred); axoneme assembly (inferred); cell projection organization (inferred); ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); primary ciliary dyskinesia (ortholog); FOUND IN 9+2 motile cilium (inferred); axoneme (inferred); cell projection (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: radial spoke head 9 homolog; radial spoke head protein 9 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,591,103 - 47,696,663 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,350,450 - 16,369,356 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,351,794 - 16,369,092 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Rsph9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,591,103 - 47,696,663 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,350,450 - 16,369,356 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,351,794 - 16,369,092 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSPH9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38643,645,036 - 43,672,600 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl643,645,036 - 43,672,600 (+)EnsemblGRCh38hg38GRCh38
GRCh37643,612,773 - 43,640,337 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,720,788 - 43,746,722 (+)NCBINCBI36Build 36hg18NCBI36
Build 34643,720,787 - 43,746,722NCBI
Celera645,164,388 - 45,190,375 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef643,331,943 - 43,357,789 (+)NCBIHuRef
CHM1_1643,615,830 - 43,641,745 (+)NCBICHM1_1
T2T-CHM13v2.0643,473,769 - 43,501,327 (+)NCBIT2T-CHM13v2.0
Rsph9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,432,964 - 46,455,171 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,432,961 - 46,455,142 (-)EnsemblGRCm39 Ensembl
GRCm381746,122,038 - 46,144,242 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,122,035 - 46,144,216 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,266,226 - 46,281,147 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361745,592,858 - 45,607,779 (-)NCBIMGSCv36mm8
Celera1749,560,383 - 49,575,628 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.87NCBI
Rsph9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8922,337,681 - 22,350,515 (+)NCBIGRCr8
mRatBN7.2914,840,115 - 14,852,950 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,840,115 - 14,860,062 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx923,424,687 - 23,437,370 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0928,487,093 - 28,499,790 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0926,788,115 - 26,800,800 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0917,224,589 - 17,245,093 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl917,225,122 - 17,245,093 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0916,120,436 - 16,140,296 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,405,162 - 10,425,818 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,402,513 - 10,416,012 (+)NCBI
Celera912,587,282 - 12,607,082 (+)NCBICelera
Cytogenetic Map9q12NCBI
Rsph9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554379,437,281 - 9,448,514 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554379,437,281 - 9,448,514 (+)NCBIChiLan1.0ChiLan1.0
RSPH9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2558,143,180 - 58,169,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1654,012,980 - 54,038,966 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0643,234,531 - 43,261,040 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1644,524,405 - 44,550,574 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl644,524,408 - 44,550,569 (+)Ensemblpanpan1.1panPan2
RSPH9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11212,093,016 - 12,105,721 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1212,096,568 - 12,105,721 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1212,119,216 - 12,131,955 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01212,576,751 - 12,589,489 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,576,810 - 12,589,490 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11212,101,802 - 12,114,539 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01212,188,811 - 12,201,535 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01212,282,317 - 12,295,061 (+)NCBIUU_Cfam_GSD_1.0
RSPH9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,625,656 - 38,641,408 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,624,942 - 38,641,410 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2744,208,277 - 44,223,937 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RSPH9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11728,497,793 - 28,520,678 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1728,495,424 - 28,520,518 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604443,697,177 - 43,720,335 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rsph9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,029,449 - 16,041,775 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,020,566 - 16,042,088 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000023950   ⟹   ENSSTOP00000020915
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647616,350,450 - 16,369,356 (-)Ensembl
RefSeq Acc Id: XM_005318634   ⟹   XP_005318691
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494647,591,116 - 47,608,121 (+)NCBI
SpeTri2.0NW_00493647616,351,794 - 16,369,086 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013355779   ⟹   XP_013211233
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494647,591,107 - 47,608,121 (+)NCBI
SpeTri2.0NW_00493647616,351,794 - 16,369,091 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040282721   ⟹   XP_040138655
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494647,591,103 - 47,627,361 (+)NCBI
RefSeq Acc Id: XM_040282722   ⟹   XP_040138656
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494647,591,106 - 47,643,976 (+)NCBI
RefSeq Acc Id: XR_005732799
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494647,591,107 - 47,696,663 (+)NCBI
RefSeq Acc Id: XR_005732800
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494647,591,107 - 47,696,663 (+)NCBI
RefSeq Acc Id: XR_005732801
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494647,591,107 - 47,696,663 (+)NCBI
RefSeq Acc Id: XP_005318691   ⟸   XM_005318634
- Peptide Label: isoform X2
- UniProtKB: I3N969 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013211233   ⟸   XM_013355779
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040138655   ⟸   XM_040282721
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040138656   ⟸   XM_040282722
- Peptide Label: isoform X4
RefSeq Acc Id: ENSSTOP00000020915   ⟸   ENSSTOT00000023950


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028063 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023950.2 UniProtKB/TrEMBL
NCBI Gene Rsph9 ENTREZGENE
PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S18 UniProtKB/TrEMBL
  RADIAL SPOKE HEAD PROTEIN 9 HOMOLOG UniProtKB/TrEMBL
UniProt I3N969 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-03 Rsph9  radial spoke head component 9  Rsph9  radial spoke head 9 homolog  Symbol and/or name change 5135510 APPROVED