Hoxc12 (homeobox C12) - Rat Genome Database

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Gene: Hoxc12 (homeobox C12) Ictidomys tridecemlineatus
Analyze
Symbol: Hoxc12
Name: homeobox C12
RGD ID: 12713665
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); sequence-specific double-stranded DNA binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein Hox-C12
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494561,984,247 - 61,988,087 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651211,176,743 - 11,178,360 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651211,176,743 - 11,178,360 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hoxc12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494561,984,247 - 61,988,087 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651211,176,743 - 11,178,360 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651211,176,743 - 11,178,360 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXC12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381253,954,903 - 53,958,956 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1253,954,903 - 53,958,956 (+)EnsemblGRCh38hg38GRCh38
GRCh371254,348,687 - 54,352,740 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361252,634,981 - 52,636,617 (+)NCBINCBI36Build 36hg18NCBI36
Build 341252,634,980 - 52,636,617NCBI
Celera1253,998,317 - 53,999,953 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1251,386,483 - 51,387,575 (+)NCBIHuRef
CHM1_11254,315,405 - 54,317,041 (+)NCBICHM1_1
T2T-CHM13v2.01253,920,393 - 53,924,445 (+)NCBIT2T-CHM13v2.0
Hoxc12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,845,261 - 102,847,044 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15102,845,192 - 102,847,044 (+)EnsemblGRCm39 Ensembl
GRCm3815102,936,826 - 102,938,609 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,936,757 - 102,938,609 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715102,767,284 - 102,768,948 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615102,764,887 - 102,766,551 (+)NCBIMGSCv36mm8
Celera15105,097,783 - 105,099,447 (+)NCBICelera
Cytogenetic Map15F3NCBI
cM Map1558.01NCBI
Hoxc12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87135,952,682 - 135,954,280 (+)NCBIGRCr8
mRatBN7.27134,074,199 - 134,075,797 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7134,074,199 - 134,075,797 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7135,829,592 - 135,831,190 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07138,058,966 - 138,060,564 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07138,044,913 - 138,046,510 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07144,547,939 - 144,549,537 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,547,939 - 144,549,537 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07142,339,296 - 142,340,894 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47141,700,558 - 141,702,156 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17141,779,873 - 141,781,472 (+)NCBI
Celera7130,500,439 - 130,502,037 (+)NCBICelera
Cytogenetic Map7q36NCBI
Hoxc12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554581,213,269 - 1,214,835 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554581,213,269 - 1,214,835 (+)NCBIChiLan1.0ChiLan1.0
HOXC12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21040,226,979 - 40,231,017 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11240,223,747 - 40,227,785 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01234,796,301 - 34,800,333 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11235,586,456 - 35,588,629 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1235,586,456 - 35,588,567 (-)Ensemblpanpan1.1panPan2
HOXC12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,305,219 - 1,307,350 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,305,770 - 1,307,350 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2744,942,269 - 44,944,908 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0271,308,411 - 1,311,050 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl271,309,471 - 1,311,050 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,326,051 - 1,328,688 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,307,623 - 1,310,261 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02745,345,889 - 45,348,527 (+)NCBIUU_Cfam_GSD_1.0
HOXC12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl519,167,157 - 19,169,795 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1519,167,174 - 19,169,684 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2519,518,428 - 19,520,932 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HOXC12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11150,065,394 - 50,074,796 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1150,065,598 - 50,067,226 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037195,972,601 - 195,976,631 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hoxc12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249042,010,025 - 2,011,606 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249042,010,025 - 2,011,606 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000020006   ⟹   ENSSTOP00000015013
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493651211,176,743 - 11,178,360 (+)Ensembl
RefSeq Acc Id: XM_040281946   ⟹   XP_040137880
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494561,984,247 - 61,988,087 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040137880 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015013.2
GenBank Protein KAG3291806 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040137880   ⟸   XM_040281946
- UniProtKB: I3MSB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000015013   ⟸   ENSSTOT00000020006
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019478 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020006.2 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
NCBI Gene Hoxc12 ENTREZGENE
PANTHER HOMEOBOX PROTEIN HOX-C12 UniProtKB/TrEMBL
  HOMEOBOX PROTEIN HOX-D12-RELATED UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
PRINTS HOMEOBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt I3MSB8 ENTREZGENE, UniProtKB/TrEMBL