Ccdc78 (coiled-coil domain containing 78) - Rat Genome Database

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Gene: Ccdc78 (coiled-coil domain containing 78) Ictidomys tridecemlineatus
Analyze
Symbol: Ccdc78
Name: coiled-coil domain containing 78
RGD ID: 12713372
Description: INVOLVED IN de novo centriole assembly involved in multi-ciliated epithelial cell differentiation (ortholog); skeletal muscle contraction (ortholog); ASSOCIATED WITH centronuclear myopathy 4 (ortholog); congenital structural myopathy (ortholog); epilepsy (ortholog); FOUND IN centriole (ortholog); cytoplasm (ortholog); deuterosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 78
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,192,468 - 112,196,469 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936501289,765 - 294,272 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ccdc78
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,192,468 - 112,196,469 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936501289,765 - 294,272 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC78
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816722,582 - 726,880 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16722,582 - 726,954 (-)EnsemblGRCh38hg38GRCh38
GRCh3716772,582 - 776,880 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3616712,583 - 716,460 (-)NCBINCBI36Build 36hg18NCBI36
Celera16972,747 - 976,638 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16694,483 - 698,374 (-)NCBIHuRef
CHM1_116772,552 - 776,443 (-)NCBICHM1_1
T2T-CHM13v2.016726,756 - 731,054 (-)NCBIT2T-CHM13v2.0
Ccdc78
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,005,554 - 26,009,487 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,005,554 - 26,009,487 (+)EnsemblGRCm39 Ensembl
GRCm381725,786,580 - 25,790,513 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,786,580 - 25,790,513 (+)EnsemblGRCm38mm10GRCm38
MGSCv371725,923,525 - 25,927,458 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,514,180 - 25,518,113 (+)NCBIMGSCv36mm8
Celera1726,319,386 - 26,323,319 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.89NCBI
Ccdc78
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,312,403 - 15,316,800 (+)NCBIGRCr8
mRatBN7.21014,808,355 - 14,812,284 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,807,710 - 14,812,282 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01015,155,839 - 15,160,039 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,156,207 - 15,159,894 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,969,092 - 14,972,982 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,052,949 - 15,064,350 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1014,477,059 - 14,481,260 (+)NCBICelera
Cytogenetic Map10q12NCBI
Ccdc78
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,478,795 - 16,482,263 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,478,219 - 16,482,452 (+)NCBIChiLan1.0ChiLan1.0
CCDC78
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218963,198 - 967,657 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,747,036 - 4,751,251 (-)NCBINHGRI_mPanPan1
PanPan1.116735,786 - 740,155 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16735,974 - 739,572 (-)Ensemblpanpan1.1panPan2
CCDC78
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,857,182 - 39,861,437 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,857,304 - 39,875,418 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,121,770 - 41,126,722 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,200,243 - 40,205,198 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,200,450 - 40,204,561 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,888,852 - 39,893,802 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,849,066 - 39,854,010 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,327,941 - 40,332,894 (+)NCBIUU_Cfam_GSD_1.0
CCDC78
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,053,936 - 41,057,734 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,053,926 - 41,057,735 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,420,178 - 41,424,583 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC78
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15642,500 - 646,337 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606830,489,336 - 30,493,389 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc78
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249131,531,511 - 1,535,067 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249131,531,325 - 1,535,637 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040278075   ⟹   XP_040134009
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344112,192,468 - 112,196,469 (+)NCBI
RefSeq Acc Id: XM_040278076   ⟹   XP_040134010
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344112,192,468 - 112,196,469 (+)NCBI
RefSeq Acc Id: XM_040278077   ⟹   XP_040134011
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344112,192,468 - 112,196,469 (+)NCBI
RefSeq Acc Id: XM_040278078   ⟹   XP_040134012
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344112,192,468 - 112,196,057 (+)NCBI
RefSeq Acc Id: XM_040278079   ⟹   XP_040134013
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344112,192,468 - 112,196,469 (+)NCBI
RefSeq Acc Id: XR_005730794
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344112,192,468 - 112,196,127 (+)NCBI
RefSeq Acc Id: XR_005730795
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344112,192,468 - 112,196,130 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_040134009   ⟸   XM_040278075
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040134010   ⟸   XM_040278076
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040134011   ⟸   XM_040278077
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040134013   ⟸   XM_040278079
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040134012   ⟸   XM_040278078
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
NCBI Gene Ccdc78 ENTREZGENE