LOC101958065 (zinc finger protein 91) - Rat Genome Database

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Gene: LOC101958065 (zinc finger protein 91) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101958065 (Ensembl: ZNF354B)
Name: zinc finger protein 91 (Ensembl:uncharacterized LOC101958065)
RGD ID: 12713260
Description: ENCODES a protein that exhibits chromatin binding (inferred); metal ion binding (inferred); transcription corepressor activity (inferred); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized LOC101958065; uncharacterized protein LOC101958065; zinc finger protein 354B; Znf354b
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213120,569,573 - 120,626,419 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367391,821,721 - 1,835,192 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367391,778,016 - 1,836,177 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC101958065
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213120,569,573 - 120,626,419 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367391,821,721 - 1,835,192 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367391,778,016 - 1,836,177 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF354B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385178,859,953 - 178,885,020 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5178,859,953 - 178,888,122 (+)EnsemblGRCh38hg38GRCh38
GRCh375178,286,954 - 178,312,021 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365178,219,607 - 178,244,021 (+)NCBINCBI36Build 36hg18NCBI36
Build 345178,219,606 - 178,244,021NCBI
Celera5173,914,525 - 173,938,862 (+)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5173,013,482 - 173,037,948 (+)NCBIHuRef
CHM1_15177,720,108 - 177,744,632 (+)NCBICHM1_1
T2T-CHM13v2.05179,413,219 - 179,438,286 (+)NCBIT2T-CHM13v2.0
Zfp354b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391150,812,613 - 50,822,486 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1150,812,650 - 50,822,460 (-)EnsemblGRCm39 Ensembl
GRCm381150,921,786 - 50,931,661 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,921,823 - 50,931,633 (-)EnsemblGRCm38mm10GRCm38
MGSCv371150,735,288 - 50,745,137 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361150,765,246 - 50,774,408 (-)NCBIMGSCv36mm8
MGSCv361151,341,268 - 51,350,430 (-)NCBIMGSCv36mm8
Cytogenetic Map11B1.3NCBI
cM Map1130.95NCBI
Znf354b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81035,734,794 - 35,752,882 (-)NCBIGRCr8
mRatBN7.21035,233,783 - 35,251,110 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1035,185,028 - 35,245,505 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1039,922,655 - 39,933,784 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01039,412,966 - 39,424,095 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01034,916,338 - 34,927,467 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01036,411,730 - 36,423,346 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1036,411,963 - 36,419,926 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01036,184,506 - 36,201,761 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1034,592,474 - 34,604,090 (-)NCBICelera
Cytogenetic Map10q22NCBI
ZNF354B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24173,778,244 - 173,833,973 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15171,917,784 - 171,973,513 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05174,022,352 - 174,046,169 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15181,278,382 - 181,303,119 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5181,278,382 - 181,303,119 (+)Ensemblpanpan1.1panPan2
LOC119863940
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha112,804,501 - 2,817,336 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0112,609,208 - 2,674,308 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl112,657,328 - 2,674,990 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1112,580,454 - 2,645,509 (-)NCBIUMICH_Zoey_3.1
ZNF354B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl279,579,753 - 79,601,137 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1279,579,737 - 79,602,080 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2281,245,570 - 81,272,296 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF354B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12380,607,607 - 80,637,849 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2380,622,444 - 80,636,458 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607511,946,927 - 11,969,169 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000008867   ⟹   ENSSTOP00000007944
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367391,821,721 - 1,835,192 (-)Ensembl
RefSeq Acc Id: XM_040273341   ⟹   XP_040129275
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213120,569,573 - 120,626,419 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040129275 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007944.3
GenBank Protein KAG3265704 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040129275   ⟸   XM_040273341
RefSeq Acc Id: ENSSTOP00000007944   ⟸   ENSSTOT00000008867
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008858 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008867.3 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf354b ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 8 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt I3MCF9_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101958065  zinc finger protein 91  LOC101958065  uncharacterized LOC101958065  Symbol and/or name change 5135510 APPROVED
2017-07-13 LOC101958065  uncharacterized LOC101958065  Znf354b  zinc finger protein 354B  Symbol and/or name change 5135510 APPROVED