Vasn (vasorin) - Rat Genome Database

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Gene: Vasn (vasorin) Ictidomys tridecemlineatus
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Symbol: Vasn
Name: vasorin
RGD ID: 12713111
Description: ENCODES a protein that exhibits transforming growth factor beta binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); cellular response to redox state (ortholog); negative regulation of epithelial to mesenchymal transition (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Kohlschutter-Tonz syndrome (ortholog); Rubinstein-Taybi syndrome (ortholog); FOUND IN cell surface (ortholog); extracellular exosome (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,570,513 - 106,581,227 (+)NCBI
SpeTri2.0NW_004936694128,398 - 138,954 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Vasn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,570,513 - 106,581,227 (+)NCBI
SpeTri2.0NW_004936694128,398 - 138,954 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VASN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl164,371,848 - 4,383,538 (+)EnsemblGRCh38hg38GRCh38
GRCh38164,371,848 - 4,383,538 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37164,421,849 - 4,433,539 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36164,361,850 - 4,373,530 (+)NCBINCBI36hg18NCBI36
Celera164,630,756 - 4,642,436 (+)NCBI
Cytogenetic Map16p13.3NCBI
HuRef164,389,019 - 4,400,698 (+)NCBIHuRef
CHM1_1164,421,602 - 4,433,268 (+)NCBICHM1_1
Vasn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,457,809 - 4,469,030 (+)NCBIGRCm39mm39
GRCm39 Ensembl164,457,805 - 4,468,666 (+)Ensembl
GRCm38164,639,945 - 4,651,166 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,639,941 - 4,650,802 (+)EnsemblGRCm38mm10GRCm38
MGSCv37164,639,945 - 4,651,166 (+)NCBIGRCm37mm9NCBIm37
MGSCv36164,555,222 - 4,566,010 (+)NCBImm8
Celera165,269,412 - 5,281,840 (+)NCBICelera
Cytogenetic Map16A1NCBI
Vasn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21010,917,750 - 10,928,259 (-)NCBI
Rnor_6.0 Ensembl1011,121,041 - 11,131,548 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01011,121,041 - 11,131,548 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0109,886,399 - 9,896,906 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41011,047,084 - 11,057,591 (-)NCBIRGSC3.4rn4RGSC3.4
Celera109,880,012 - 9,890,519 (-)NCBICelera
Cytogenetic Map10q12NCBI
Vasn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544213,060,923 - 13,071,303 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544213,060,923 - 13,071,303 (-)NCBIChiLan1.0ChiLan1.0
VASN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1164,466,452 - 4,478,154 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl164,475,506 - 4,477,527 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0163,298,836 - 3,310,548 (+)NCBIMhudiblu_PPA_v0panPan3
VASN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1637,014,704 - 37,025,734 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl637,015,333 - 37,017,351 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha638,343,008 - 38,354,053 (-)NCBI
ROS_Cfam_1.0637,219,012 - 37,230,058 (-)NCBI
UMICH_Zoey_3.1637,013,260 - 37,024,304 (-)NCBI
UNSW_CanFamBas_1.0636,906,434 - 36,917,479 (-)NCBI
UU_Cfam_GSD_1.0637,307,717 - 37,318,765 (-)NCBI
VASN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl337,961,425 - 37,972,115 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1337,961,425 - 37,972,477 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2339,016,527 - 39,029,208 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VASN
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,052,239 - 4,063,884 (+)NCBI
Vasn
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248242,154,646 - 2,164,796 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005337732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005337732   ⟹   XP_005337789
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344106,570,513 - 106,581,227 (+)NCBI
SpeTri2.0NW_004936694128,398 - 138,954 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337789 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005337789   ⟸   XM_005337732
- UniProtKB: I3MWH7 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
EGF-like   Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021409 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000016472 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026113 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
NCBI Gene Vasn ENTREZGENE
Pfam EGF UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PROSITE EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
UniProt I3MWH7 ENTREZGENE, UniProtKB/TrEMBL