Krcc1 (lysine rich coiled-coil 1) - Rat Genome Database

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Gene: Krcc1 (lysine rich coiled-coil 1) Ictidomys tridecemlineatus
Analyze
Symbol: Krcc1
Name: lysine rich coiled-coil 1
RGD ID: 12712886
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lysine rich coiled-coil 1, transcript variant X1; lysine rich coiled-coil 1, transcript variant X2; lysine rich coiled-coil 1, transcript variant X3; lysine-rich coiled-coil protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629280,055,160 - 80,074,568 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936712798,667 - 803,166 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936712783,696 - 803,211 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Krcc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629280,055,160 - 80,074,568 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936712798,667 - 803,166 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936712783,696 - 803,211 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRCC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38288,027,205 - 88,055,783 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl288,027,205 - 88,064,252 (-)EnsemblGRCh38hg38GRCh38
GRCh37288,326,724 - 88,355,302 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36288,107,839 - 88,136,363 (-)NCBINCBI36Build 36hg18NCBI36
Celera288,430,632 - 88,459,116 (+)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef287,248,969 - 87,277,482 (-)NCBIHuRef
CHM1_1288,255,936 - 88,284,392 (-)NCBICHM1_1
T2T-CHM13v2.0288,038,504 - 88,067,074 (-)NCBIT2T-CHM13v2.0
Krcc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39671,248,661 - 71,263,809 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl671,248,661 - 71,262,303 (+)EnsemblGRCm39 Ensembl
GRCm38671,271,677 - 71,286,825 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl671,271,677 - 71,285,319 (+)EnsemblGRCm38mm10GRCm38
MGSCv37671,222,013 - 71,235,313 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36671,201,596 - 71,214,896 (+)NCBIMGSCv36mm8
Celera673,360,968 - 73,364,136 (+)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.14NCBI
Krcc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84104,819,958 - 104,832,987 (+)NCBIGRCr8
mRatBN7.24103,261,642 - 103,274,672 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4103,261,536 - 103,277,156 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4108,651,330 - 108,664,360 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04104,426,434 - 104,439,466 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04103,031,573 - 103,044,603 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0499,133,735 - 99,148,236 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl499,133,842 - 99,146,827 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04163,912,805 - 163,927,274 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44104,483,865 - 104,496,846 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14104,728,345 - 104,741,327 (+)NCBI
Celera492,437,598 - 92,450,576 (+)NCBICelera
Cytogenetic Map4q32NCBI
Krcc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955424812,242 - 825,122 (+)NCBIChiLan1.0ChiLan1.0
KRCC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21239,245,824 - 39,275,078 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A39,248,585 - 39,277,838 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A87,160,679 - 87,189,898 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A89,069,217 - 89,097,913 (-)NCBIpanpan1.1PanPan1.1panPan2
KRCC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11738,306,765 - 38,322,782 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1737,991,794 - 38,007,812 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01739,038,850 - 39,054,884 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11738,205,985 - 38,222,065 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01738,241,744 - 38,257,760 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01738,590,109 - 38,606,198 (+)NCBIUU_Cfam_GSD_1.0
KRCC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl357,928,261 - 57,946,290 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1357,928,263 - 57,946,294 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2360,536,325 - 60,554,513 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KRCC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11418,732,463 - 18,763,193 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1418,761,835 - 18,762,614 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660801,014,744 - 1,043,338 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Krcc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474916,443,388 - 16,455,952 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000006380   ⟹   ENSSTOP00000005704
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936712798,667 - 803,166 (+)Ensembl
RefSeq Acc Id: XM_005338432   ⟹   XP_005338489
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629280,055,160 - 80,074,568 (-)NCBI
SpeTri2.0NW_004936712783,696 - 803,211 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021735331   ⟹   XP_021591006
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629280,055,160 - 80,074,568 (-)NCBI
SpeTri2.0NW_004936712783,696 - 803,211 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040270657   ⟹   XP_040126591
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629280,055,160 - 80,067,768 (-)NCBI
RefSeq Acc Id: XM_040270658   ⟹   XP_040126592
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629280,055,160 - 80,074,568 (-)NCBI
RefSeq Acc Id: XP_005338489   ⟸   XM_005338432
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021591006   ⟸   XM_021735331
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040126592   ⟸   XM_040270658
- Peptide Label: isoform X2
- UniProtKB: I3M7T6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040126591   ⟸   XM_040270657
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000005704   ⟸   ENSSTOT00000006380


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006394 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006380.3 UniProtKB/TrEMBL
NCBI Gene Krcc1 ENTREZGENE
PANTHER LYSINE-RICH COILED-COIL PROTEIN 1 UniProtKB/TrEMBL
  LYSINE-RICH COILED-COIL PROTEIN 1 UniProtKB/TrEMBL
UniProt I3M7T6 ENTREZGENE, UniProtKB/TrEMBL