Cfap46 (cilia and flagella associated protein 46) - Rat Genome Database

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Gene: Cfap46 (cilia and flagella associated protein 46) Ictidomys tridecemlineatus
Analyze
Symbol: Cfap46
Name: cilia and flagella associated protein 46
RGD ID: 12712760
Description: INVOLVED IN axoneme assembly (inferred); cilium movement involved in cell motility (inferred); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); genetic disease (ortholog); situs inversus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cilia- and flagella-associated protein 46; tetratricopeptide repeat domain 40; Ttc40
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244072136,434,461 - 6,514,655 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648619,046,898 - 19,126,745 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648619,046,898 - 19,126,746 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cfap46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244072136,434,461 - 6,514,655 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648619,046,898 - 19,126,745 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648619,046,898 - 19,126,746 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810132,808,392 - 132,942,570 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10132,808,392 - 132,942,823 (-)EnsemblGRCh38hg38GRCh38
GRCh3710134,621,896 - 134,756,074 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610134,471,886 - 134,521,226 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410134,471,886 - 134,521,226NCBI
Celera10128,844,843 - 128,896,279 (+)NCBICelera
Cytogenetic Map10q26.3NCBI
HuRef10128,173,144 - 128,306,452 (-)NCBIHuRef
CHM1_110134,903,770 - 135,036,747 (-)NCBICHM1_1
T2T-CHM13v2.010133,757,635 - 133,892,019 (-)NCBIT2T-CHM13v2.0
Cfap46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397139,180,830 - 139,264,701 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7139,180,867 - 139,263,733 (-)EnsemblGRCm39 Ensembl
GRCm387139,600,914 - 139,684,787 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7139,600,951 - 139,683,817 (-)EnsemblGRCm38mm10GRCm38
MGSCv377146,786,850 - 146,802,228 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367139,452,271 - 139,478,738 (-)NCBIMGSCv36mm8
Celera7139,395,090 - 139,410,567 (-)NCBICelera
Cytogenetic Map7F4NCBI
cM Map784.57NCBI
Cfap46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81203,832,818 - 203,912,389 (-)NCBIGRCr8
mRatBN7.21194,403,212 - 194,482,790 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1194,403,211 - 194,482,730 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01211,943,436 - 212,022,287 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,983,729 - 212,022,212 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01218,867,208 - 218,944,408 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41199,435,733 - 199,504,533 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1192,080,890 - 192,160,962 (-)NCBICelera
Cytogenetic Map1q41NCBI
Cfap46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547710,413,017 - 10,517,337 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547710,412,774 - 10,517,415 (-)NCBIChiLan1.0ChiLan1.0
CFAP46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28144,817,191 - 145,032,889 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110144,822,548 - 145,038,246 (-)NCBINHGRI_mPanPan1
PanPan1.110133,706,337 - 133,850,390 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10133,706,366 - 133,850,322 (-)Ensemblpanpan1.1panPan2
CFAP46
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12840,581,808 - 40,674,124 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2840,581,841 - 40,676,168 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2840,645,575 - 40,740,750 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02841,225,002 - 41,321,355 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12840,708,380 - 40,804,079 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02840,698,104 - 40,793,884 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02841,100,821 - 41,196,663 (-)NCBIUU_Cfam_GSD_1.0
CFAP46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14140,916,092 - 141,002,708 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114140,916,089 - 141,002,805 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214152,888,318 - 152,926,967 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103216748
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19125,395,431 - 125,530,296 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9125,396,428 - 125,530,178 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604887,095,639 - 87,151,897 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473713,897,221 - 14,015,533 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473713,897,146 - 14,021,257 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000022610   ⟹   ENSSTOP00000018326
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648619,046,898 - 19,126,745 (-)Ensembl
RefSeq Acc Id: XM_040272330   ⟹   XP_040128264
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244072136,434,461 - 6,514,655 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040128264 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018326.2
GenBank Protein KAG3263829 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040128264   ⟸   XM_040272330
- UniProtKB: I3N1T0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000018326   ⟸   ENSSTOT00000022610


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026167 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022610.2 UniProtKB/TrEMBL
InterPro CFAP46 UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
NCBI Gene Cfap46 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46 UniProtKB/TrEMBL
  PTHR15977 UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt I3N1T0 ENTREZGENE, UniProtKB/TrEMBL