Cacna2d2 (calcium voltage-gated channel auxiliary subunit alpha2delta 2) - Rat Genome Database

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Gene: Cacna2d2 (calcium voltage-gated channel auxiliary subunit alpha2delta 2) Ictidomys tridecemlineatus
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Symbol: Cacna2d2
Name: calcium voltage-gated channel auxiliary subunit alpha2delta 2
RGD ID: 12712375
Description: ENCODES a protein that exhibits voltage-gated calcium channel activity (ortholog); INVOLVED IN calcium ion transport (ortholog); muscle cell development (ortholog); neuromuscular junction development (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; alfentanil pharmacodynamics pathway; ASSOCIATED WITH Ataxia (ortholog); Cardiac Arrhythmias (ortholog); Cerebellar Atrophy with Seizures and Variable Developmental Delay (ortholog); FOUND IN GABA-ergic synapse (ortholog); presynaptic active zone membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium voltage-gated channel auxiliary subunit alpha2delta 2, transcript variant X1; calcium voltage-gated channel auxiliary subunit alpha2delta 2, transcript variant X2; calcium voltage-gated channel auxiliary subunit alpha2delta 2, transcript variant X3; calcium voltage-gated channel auxiliary subunit alpha2delta 2, transcript variant X4; voltage-dependent calcium channel subunit alpha-2/delta-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560265,127,442 - 65,263,213 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,889,846 - 2,023,715 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,889,811 - 2,023,710 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
alfentanil pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupivacaine pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
buprenorphine pharmacodynamics pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
chloroprocaine pharmacodynamics pathway  (ISO)
citalopram pharmacodynamics pathway  (ISO)
cocaine pharmacodynamics pathway  (ISO)
codeine and morphine pharmacodynamics pathway  (ISO)
desipramine pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
diphenoxylate pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
escitalopram pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
ethylmorphine pharmacodynamics pathway  (ISO)
felodipine pharmacokinetics pathway  (ISO)
fentanyl pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fluoxetine pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
gliclazide pharmacodynamics pathway  (ISO)
glyburide pharmacodynamics pathway  (ISO)
heroin pharmacodynamics pathway  (ISO)
hydrocodone pharmacodynamics pathway  (ISO)
hydromorphone pharmacodynamics pathway  (ISO)
ibutilide pharmacodynamics pathway  (ISO)
imipramine pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levacetylmethadol pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
levobupivacaine phgarmacodynamics pathway  (ISO)
levorphanol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
mepivacaine pharmacodynamics pathway  (ISO)
methadone pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nalbuphine pharmacodynamics pathway  (ISO)
naloxone pharmacodynamics pathway  (ISO)
naltrexone pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nicotine pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
oxybuprocaine pharmacodynamics pathway  (ISO)
oxycodone pharmacodynamics pathway  (ISO)
oxymorphone pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
pentazocine pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway   (ISO)
potassium channel inhibitors pharmacodynamics pathway  (ISO)
prilocaine pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
procaine pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
remifentanil pharmacodynamics pathway  (ISO)
ropivacaine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
tramadol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cacna2d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560265,127,442 - 65,263,213 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,889,846 - 2,023,715 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,889,811 - 2,023,710 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA2D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38350,362,613 - 50,504,244 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl350,362,613 - 50,504,244 (-)EnsemblGRCh38hg38GRCh38
GRCh37350,400,044 - 50,541,675 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,375,234 - 50,515,896 (-)NCBINCBI36Build 36hg18NCBI36
Build 34350,375,233 - 50,515,896NCBI
Celera350,373,061 - 50,513,724 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef350,455,831 - 50,596,932 (-)NCBIHuRef
CHM1_1350,352,505 - 50,493,122 (-)NCBICHM1_1
T2T-CHM13v2.0350,392,335 - 50,534,145 (-)NCBIT2T-CHM13v2.0
Cacna2d2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,276,948 - 107,406,545 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,276,811 - 107,406,542 (+)EnsemblGRCm39 Ensembl
GRCm389107,399,733 - 107,529,346 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,399,612 - 107,529,343 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,302,211 - 107,431,674 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,257,713 - 107,387,159 (+)NCBIMGSCv36mm8
Celera9107,007,997 - 107,138,095 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map958.02NCBI
Cacna2d2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88116,950,860 - 117,082,159 (+)NCBIGRCr8
mRatBN7.28108,072,208 - 108,203,516 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,072,454 - 108,203,173 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8113,699,122 - 113,828,659 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08111,898,292 - 112,027,815 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08109,741,072 - 109,870,596 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,154,661 - 116,285,643 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,154,736 - 116,284,985 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08115,510,729 - 115,641,903 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,643,409 - 112,775,460 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18112,662,863 - 112,794,915 (+)NCBI
Celera8107,381,970 - 107,508,046 (+)NCBICelera
Cytogenetic Map8q32NCBI
Cacna2d2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555322,163,529 - 2,283,508 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555322,163,529 - 2,283,509 (-)NCBIChiLan1.0ChiLan1.0
CACNA2D2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2250,343,478 - 50,484,673 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1350,348,253 - 50,489,448 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0350,288,926 - 50,430,152 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1351,524,200 - 51,638,249 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,526,075 - 51,640,406 (-)Ensemblpanpan1.1panPan2
CACNA2D2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12038,859,047 - 38,995,239 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2038,883,530 - 38,993,273 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2038,778,136 - 38,916,454 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,213,098 - 39,351,432 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,212,486 - 39,351,069 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12038,580,983 - 38,719,283 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02038,984,749 - 39,122,858 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,264,526 - 39,402,846 (+)NCBIUU_Cfam_GSD_1.0
CACNA2D2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,845,115 - 32,988,774 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,845,110 - 32,988,851 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21336,023,325 - 36,167,052 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CACNA2D2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,751,026 - 11,891,407 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,749,727 - 11,890,924 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,095,234 - 155,235,652 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cacna2d2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247304,212,901 - 4,345,849 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247304,211,189 - 4,346,119 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000011664   ⟹   ENSSTOP00000010467
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365291,889,846 - 2,023,715 (-)Ensembl
RefSeq Acc Id: XM_013359374   ⟹   XP_013214828
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560265,127,442 - 65,263,213 (-)NCBI
SpeTri2.0NW_0049365291,889,811 - 2,023,710 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013359375   ⟹   XP_013214829
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560265,127,442 - 65,263,213 (-)NCBI
SpeTri2.0NW_0049365291,889,811 - 2,023,710 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021727504   ⟹   XP_021583179
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560265,127,442 - 65,263,213 (-)NCBI
SpeTri2.0NW_0049365291,889,811 - 2,023,710 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021727505   ⟹   XP_021583180
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560265,127,442 - 65,263,213 (-)NCBI
SpeTri2.0NW_0049365291,889,811 - 2,023,710 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040269754   ⟹   XP_040125688
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560265,127,442 - 65,263,213 (-)NCBI
RefSeq Acc Id: XM_040269755   ⟹   XP_040125689
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560265,127,442 - 65,263,213 (-)NCBI
RefSeq Acc Id: XM_040269756   ⟹   XP_040125690
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560265,127,442 - 65,263,213 (-)NCBI
RefSeq Acc Id: XM_040269758   ⟹   XP_040125692
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560265,127,442 - 65,263,213 (-)NCBI
RefSeq Acc Id: XP_013214829   ⟸   XM_013359375
- Peptide Label: isoform X7
- UniProtKB: I3MHS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013214828   ⟸   XM_013359374
- Peptide Label: isoform X4
- UniProtKB: I3MHS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021583180   ⟸   XM_021727505
- Peptide Label: isoform X8
- UniProtKB: I3MHS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021583179   ⟸   XM_021727504
- Peptide Label: isoform X3
- UniProtKB: I3MHS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040125692   ⟸   XM_040269758
- Peptide Label: isoform X6
- UniProtKB: I3MHS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125690   ⟸   XM_040269756
- Peptide Label: isoform X5
- UniProtKB: I3MHS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125689   ⟸   XM_040269755
- Peptide Label: isoform X2
- UniProtKB: I3MHS3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040125688   ⟸   XM_040269754
- Peptide Label: isoform X1
- UniProtKB: I3MHS3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000010467   ⟸   ENSSTOT00000011664
Protein Domains
VWFA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011652 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011664.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
  PAS domain UniProtKB/TrEMBL
InterPro Ca_channel_alpha-2/delta UniProtKB/TrEMBL
  VDCC_a2/dsu UniProtKB/TrEMBL
  VWA_N UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene Cacna2d2 ENTREZGENE
PANTHER VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-2 UniProtKB/TrEMBL
  VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED UniProtKB/TrEMBL
Pfam VGCC_alpha2 UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
  VWA_N UniProtKB/TrEMBL
PROSITE VWFA UniProtKB/TrEMBL
SMART VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
UniProt I3MHS3 ENTREZGENE, UniProtKB/TrEMBL