Sec23a (SEC23 homolog A, COPII coat complex component)

Gene: Sec23a (SEC23 homolog A, COPII coat complex component) Ictidomys tridecemlineatus

Analyze

Symbol:

Sec23a

Name:

SEC23 homolog A, COPII coat complex component (Ensembl:Sec23 homolog A, coat complex II component)

RGD ID:

12712085

Description:

ENCODES a protein that exhibits GTPase activator activity (inferred); metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN COPII-coated vesicle budding (inferred); COPII-coated vesicle cargo loading (inferred); endoplasmic reticulum to Golgi vesicle-mediated transport (inferred); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); craniolenticulosutural dysplasia (ortholog); genetic disease (ortholog); FOUND IN COPII vesicle coat (inferred); COPII-coated ER to Golgi transport vesicle (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Sec23 homolog A, coat complex II component

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	49,137,896 - 49,198,555 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936494	12,642,870 - 12,699,218 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936494	12,643,790 - 12,702,390 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain-Lung-Thyroid Syndrome (ISO)

craniolenticulosutural dysplasia (ISO)

genetic disease (ISO)

osteoarthritis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

COPII-coated vesicle budding (IEA)

COPII-coated vesicle cargo loading (IEA)

endoplasmic reticulum to Golgi vesicle-mediated transport (IEA)

intracellular protein transport (IEA)

protein localization to plasma membrane (IEA)

protein transport (IEA)

vesicle-mediated transport (IEA)

Cellular Component

COPII vesicle coat (IEA)

COPII-coated ER to Golgi transport vesicle (IEA)

cytoplasm (IEA)

cytoplasmic vesicle (IEA)

cytosol (IEA)

endoplasmic reticulum (IEA)

endoplasmic reticulum exit site (IEA)

endoplasmic reticulum membrane (IEA)

ER to Golgi transport vesicle membrane (IEA)

Golgi membrane (IEA)

membrane (IEA)

perinuclear region of cytoplasm (IEA)

Molecular Function

GTPase activator activity (IEA)

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Sec23a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	49,137,896 - 49,198,555 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936494	12,642,870 - 12,699,218 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936494	12,643,790 - 12,702,390 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEC23A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	39,031,919 - 39,103,235 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	39,031,919 - 39,109,646 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	39,501,123 - 39,572,439 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	38,570,874 - 38,642,188 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	38,570,873 - 38,642,188	NCBI
Celera	14	19,365,589 - 19,437,057 (-)	NCBI		Celera
Cytogenetic Map	14	q21.1	NCBI
HuRef	14	19,615,598 - 19,686,718 (-)	NCBI		HuRef
CHM1_1	14	39,499,753 - 39,571,039 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	33,220,592 - 33,291,912 (-)	NCBI		T2T-CHM13v2.0

Sec23a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	59,005,170 - 59,058,803 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	59,005,169 - 59,058,803 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	58,958,384 - 59,012,017 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	58,958,383 - 59,012,017 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	60,059,371 - 60,113,004 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	59,876,396 - 59,930,029 (-)	NCBI		MGSCv36	mm8
Celera	12	60,121,595 - 60,175,287 (-)	NCBI		Celera
Cytogenetic Map	12	C1	NCBI
cM Map	12	25.97	NCBI

Sec23a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	82,393,699 - 82,442,594 (-)	NCBI		GRCr8
mRatBN7.2	6	76,658,793 - 76,706,125 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	76,658,427 - 76,706,035 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	77,111,637 - 77,158,214 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	77,410,966 - 77,457,537 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	76,838,431 - 76,885,014 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	80,059,742 - 80,107,340 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	80,060,916 - 80,107,236 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	89,585,614 - 89,633,225 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	79,660,575 - 79,706,898 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	79,661,840 - 79,704,989 (-)	NCBI
Celera	6	75,420,329 - 75,466,292 (-)	NCBI		Celera
Cytogenetic Map	6	q23	NCBI

Sec23a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	22,189,181 - 22,247,467 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	22,192,549 - 22,243,090 (+)	NCBI	ChiLan1.0	ChiLan1.0

SEC23A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	40,365,649 - 40,438,197 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	39,582,163 - 39,652,931 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	19,802,612 - 19,873,076 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	38,159,381 - 38,229,366 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	38,159,381 - 38,229,550 (-)	Ensembl	panpan1.1		panPan2

SEC23A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	17,205,960 - 17,292,067 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	17,234,394 - 17,292,638 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	17,017,543 - 17,103,065 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	17,328,852 - 17,414,117 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	17,356,719 - 17,414,078 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	17,016,525 - 17,101,723 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	17,087,718 - 17,173,549 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	17,374,646 - 17,460,016 (-)	NCBI		UU_Cfam_GSD_1.0

SEC23A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	61,113,802 - 61,193,258 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	61,113,760 - 61,184,218 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	65,656,352 - 65,725,762 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SEC23A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	15,801,945 - 15,874,938 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	15,801,509 - 15,874,994 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	4,845,443 - 4,918,617 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sec23a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624813	8,499,721 - 8,558,110 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624813	8,502,473 - 8,558,078 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013357463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021724715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000013430 ⟹ ENSSTOP00000012035

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936494	12,645,082 - 12,693,059 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000035960 ⟹ ENSSTOP00000028674

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936494	12,642,870 - 12,699,218 (-)	Ensembl

RefSeq Acc Id:

XM_013357463 ⟹ XP_013212917

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	49,137,896 - 49,192,902 (-)	NCBI
SpeTri2.0	NW_004936494	12,643,790 - 12,698,824 (-)	NCBI

Sequence:

show sequence

CGCCTTCTTGACGTGGCAGAGGCGGCACCAGCCATGTTGGCGGGGCCGAGGTCCTCCAGGAGGT
CGGGGGCGGGGCGGCGCCGGCCCTGATTGTAGTGCCACGGCTGGTCCTGCCGGGTGTAGGGGAC
TGACTTTGCCCGGACAAGGCTGCGACAAGCGCGGGTCTCGTAGGAGGGATAGTGTGCAATAACA
ATCAAGCTTTACAATGACAACCTATTTGGAATTCATCCAACAAAATGAAGAACGAGATGGAGTT
CGATTTAGTTGGAATGTTTGGCCATCAAGTCGACTGGAAGCTACAAGAATGGTTGTTCCAGTTG
CAGCCCTCTTTACACCACTGAAGGAAAGGCCTGATTTACCACCCATTCAATATGAACCTGTTCT
GTGTAGTAGGACTACTTGCCGTGCAGTTTTGAATCCTTTATGTCAAGTGGATTATCGAGCAAAA
CTCTGGGCTTGCAACTTTTGTTATCAAAGGAATCAGTTTCCACCTACTTATGCTGGGATATCTG
AACTGAATCAGCCTGCTGAACTTTTACCTCAGTTTTCTAGCATTGAATATGTAGTTCTGCGTGG
TCCACAGATGCCTTTGATATTCCTCTATGTGGTTGATACTTGCATGGAAGATGAAGATTTACAA
GCCTTGAAAGAATCAATGCAGATGTCATTAAGTCTCTTACCACCTACAGCTTTGGTTGGACTTA
TTACTTTTGGGAGGATGGTGCAGGTTCATGAACTTGGATGTGAAGGCATTTCAAAAAGCTATGT
CTTTAGGGGAACAAAAGATCTCTCTGCCAAACAACTGCAGGAGATGCTGGGACTCTCTAAAGTA
CCAGTCACCCAAGCAACACGAGGTCCTCAGGTACAGCAGCCACCTCCTTCCAATAGATTTTTAC
AGCCAGTACAGAAAATAGACATGAATCTCACAGATCTCCTGGGAGAACTTCAGCGAGACCCTTG
GCCTGTGCCACAGGGAAAGAGACCTTTGCGTTCCTCGGGAGTGGCACTTTCCATAGCTGTAGGA
CTACTTGAGTGTACTTTCCCCAACACTGGTGCTCGTATCATGATGTTCATTGGTGGTCCTGCTA
CTCAGGGACCTGGAATGGTGGTTGGAGACGAATTGAAGACACCTATAAGATCATGGCATGACAT
TGAAAAAGACAATGCCAAATATGTTAAAAAGGGAACCAAGCATTTTGAAGCACTGGCTAATCGA
GCTGCTACAACTGGTCATGTTATTGACATCTACGCGTGTGCATTAGATCAGACAGGTCTCCTGG
AGATGAAATGCTGTCCCAACCTTACTGGTGGATACATGGTCATGGGTGATTCTTTCAACACTTC
TTTATTCAAACAAACTTTTCAAAGAGTCTTTACCAAAGATATGCATGGACAGTTTAAAATGGGC
TTTGGTGGTACATTAGAAATAAAGACTTCAAGGGAAATAAAGATTTCAGGAGCAATTGGACCCT
GTGTGTCTCTCAATTCCAAAGGACCTTGTGTATCTGAAAATGAGATAGGAACGGGTGGCACTTG
TCAATGGAAGATATGTGGACTCAGTCCCACTACAACCTTAGCTATATATTTTGAGGTTGTTAAT
CAGCATAATGCTCCAATTCCTCAAGGAGGACGTGGTGCAATCCAGTTTGTGACCCAGTATCAGC
ATTCAAGTGGGCAGAGGCGCATCCGGGTGACTACCATTGCTAGGAACTGGGCAGATGCTCAAAC
TCAAATCCAAAACATCGCTGCATCTTTTGACCAGGAGGCAGCTGCCATTCTTATGGCCCGACTA
GCAATATATAGAGCAGAAACAGAGGAAGGACCAGATGTGCTCAGATGGCTGGACAGACAGCTCA
TTCGACTGTGTCAGAAATTTGGAGAGTATCACAAAGATGATCCAAGTTCCTTTAGATTTTCGGA
AACTTTCTCTCTTTATCCACAGTTTATGTTTCATTTAAGACGATCTCCTTTCTTGCAAGTTTTT
AACAATAGTCCAGATGAAAGTTCGTATTATCGTCATCATTTTATGCGTCAAGATCTTACCCAGT
CTCTAATCATGATTCAGCCTATTCTGTATGCATATTCTTTTAGTGGACCACCAGAGCCGGTTCT
TCTTGATAGCAGCAGCATTCTTGCAGATCGTATTCTTCTTATGGACACATTCTTCCAGATTTTG
ATTTATCATGGTGAGACTATAGCACAGTGGCGGAAGTCAGGATACCAAGACATGCCAGAATATG
AAAATTTCCGTCACCTTCTGCAAGCCCCAGTAGATGATGCACAGGAGATCCTTCACTCCAGATT
TCCAATGCCAAGATATATTGACACCGAACATGGGGGCAGCCAGGCTCGTTTCCTGCTTTCCAAA
GTCAACCCTTCACAGACTCATAATAATATGTATGCCTGGGGGCAGGAGTCTGGAGCACCCATCC
TCACAGATGATGTTAGTTTACAAGTGTTTATGGATCACTTGAAGAAACTTGCTGTGTCAAGTGC
TGCTTGACATATGAAACATGTTAAAGACACTTAAGAAGATGAAATATTTCAGTTTCATTTTTTT
CCCTTTTTCAGTTTGTCTGTGGAAACCAACAGATCTCTCTAGACTTTTTTTTTTGTATCAGTAT
GGTTTGAGAAAACATAAAAATGTTCACGTTTGTAGATAAAGCTGGAATATAATGAGAGCATTGA
GAACAAATTTGTTTTGCTTGCCACAGTATTATAACTGGTTTTAGAATTTCAAAGTCTTTATAAC
TTAATTATGTTTAAGAGTAAAAATAGAGTCTGCCTTGTACAACAGATATAACTTATTTGTATAT
TGCAGACAAATCCAAGGTGGCACTGAATATCCTCACTGACCTTTTAAAAACTTATTTAATTTTA
GCCAGAAAGGAACAAATCAATAGTTGTGATAAATGTGAACATTTTTTCTTATTTGTTGAATTTT
TTTTAGTGATTTTCAGCATTTATGCATACACTTTTTCCTGTAGTTTTTCTGGTAAGGCAGATTT
ATTCTATGATTTGTTTAGAAATTATCTGACTTTATAATGGCAATTTTCATGAAGATAATTTAAT
GTTTTTGATTATTTGGAAAAATTATTTAGAGATGAAAAATTTTGGTGGGGGTAACATTCCCACA
AATGACAATAAATGTGAAATTCCTACAAAGTACCTAACTTATGTGACTAACCACAATAATTTCT
TTTTAAAAAGGATACAGAAAATAAAGCATTTGGTTAGAGTGCATAAAGAAAGCCTTTGCAGTAA
AATGACTATTGTAACTACTAAACCAAATTTGGTTTTCACTACTCATTTTGTTGTTTTCCCTTCT
TTTTCTGTGGTAAATTTTACATCATATCCTTCAGTATTTTAACACTATTTTGGGAGTTTACATT
TCTTATTTCTGCTTCCTTTGTGTGAACTTTATTAAGTTGTGGTTCTTATTGAAACAGTATTATA
TAATGTTTAATTATGTCACGTGATGATACTTAGTTCTATTTTGATTTATTCATCAGTAACATTC
GCTTTTACCTTTTAAAGTTTACTTATAGCAGATGTTTACATTGCTAAAGCCAGATATGTTTTGA
CAATGAAATTTACATATCAAGTACTGCAAACGAAAGGTGGTGCGCTGATATGTGCTTAGAAAGA
TAGTTCTGATGATTGTTACTTGCATGAACACAATCATATGATGGTAAAACTTATAATTGTTATA
TTCAGTTTGCTTAAGTAAGTTCCATTTTATTTGAATTGAACTGTGCTAGACCAAAATGCCAATA
AAATATACTTTTCTCTGTG

hide sequence

RefSeq Acc Id:

XM_021724715 ⟹ XP_021580390

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	49,137,896 - 49,198,555 (-)	NCBI
SpeTri2.0	NW_004936494	12,643,791 - 12,702,390 (-)	NCBI

Sequence:

show sequence

CTATCAAGTGCAGATCTGCAGATTAATTGGATATGGAGAAAGAGAGCACCAGCAGAAGTACCAA
GATCAAGGGTGGTATATTTGGTAATAATTTCAGTAAATCGAGCCAAAAAGAGGACAGGGTTTTC
ATCAGGTCCTTGGCAATAACAATCAAGCTTTACAATGACAACCTATTTGGAATTCATCCAACAA
AATGAAGAACGAGATGGAGTTCGATTTAGTTGGAATGTTTGGCCATCAAGTCGACTGGAAGCTA
CAAGAATGGTTGTTCCAGTTGCAGCCCTCTTTACACCACTGAAGGAAAGGCCTGATTTACCACC
CATTCAATATGAACCTGTTCTGTGTAGTAGGACTACTTGCCGTGCAGTTTTGAATCCTTTATGT
CAAGTGGATTATCGAGCAAAACTCTGGGCTTGCAACTTTTGTTATCAAAGGAATCAGTTTCCAC
CTACTTATGCTGGGATATCTGAACTGAATCAGCCTGCTGAACTTTTACCTCAGTTTTCTAGCAT
TGAATATGTAGTTCTGCGTGGTCCACAGATGCCTTTGATATTCCTCTATGTGGTTGATACTTGC
ATGGAAGATGAAGATTTACAAGCCTTGAAAGAATCAATGCAGATGTCATTAAGTCTCTTACCAC
CTACAGCTTTGGTTGGACTTATTACTTTTGGGAGGATGGTGCAGGTTCATGAACTTGGATGTGA
AGGCATTTCAAAAAGCTATGTCTTTAGGGGAACAAAAGATCTCTCTGCCAAACAACTGCAGGAG
ATGCTGGGACTCTCTAAAGTACCAGTCACCCAAGCAACACGAGGTCCTCAGGTACAGCAGCCAC
CTCCTTCCAATAGATTTTTACAGCCAGTACAGAAAATAGACATGAATCTCACAGATCTCCTGGG
AGAACTTCAGCGAGACCCTTGGCCTGTGCCACAGGGAAAGAGACCTTTGCGTTCCTCGGGAGTG
GCACTTTCCATAGCTGTAGGACTACTTGAGTGTACTTTCCCCAACACTGGTGCTCGTATCATGA
TGTTCATTGGTGGTCCTGCTACTCAGGGACCTGGAATGGTGGTTGGAGACGAATTGAAGACACC
TATAAGATCATGGCATGACATTGAAAAAGACAATGCCAAATATGTTAAAAAGGGAACCAAGCAT
TTTGAAGCACTGGCTAATCGAGCTGCTACAACTGGTCATGTTATTGACATCTACGCGTGTGCAT
TAGATCAGACAGGTCTCCTGGAGATGAAATGCTGTCCCAACCTTACTGGTGGATACATGGTCAT
GGGTGATTCTTTCAACACTTCTTTATTCAAACAAACTTTTCAAAGAGTCTTTACCAAAGATATG
CATGGACAGTTTAAAATGGGCTTTGGTGGTACATTAGAAATAAAGACTTCAAGGGAAATAAAGA
TTTCAGGAGCAATTGGACCCTGTGTGTCTCTCAATTCCAAAGGACCTTGTGTATCTGAAAATGA
GATAGGAACGGGTGGCACTTGTCAATGGAAGATATGTGGACTCAGTCCCACTACAACCTTAGCT
ATATATTTTGAGGTTGTTAATCAGCATAATGCTCCAATTCCTCAAGGAGGACGTGGTGCAATCC
AGTTTGTGACCCAGTATCAGCATTCAAGTGGGCAGAGGCGCATCCGGGTGACTACCATTGCTAG
GAACTGGGCAGATGCTCAAACTCAAATCCAAAACATCGCTGCATCTTTTGACCAGGAGGCAGCT
GCCATTCTTATGGCCCGACTAGCAATATATAGAGCAGAAACAGAGGAAGGACCAGATGTGCTCA
GATGGCTGGACAGACAGCTCATTCGACTGTGTCAGAAATTTGGAGAGTATCACAAAGATGATCC
AAGTTCCTTTAGATTTTCGGAAACTTTCTCTCTTTATCCACAGTTTATGTTTCATTTAAGACGA
TCTCCTTTCTTGCAAGTTTTTAACAATAGTCCAGATGAAAGTTCGTATTATCGTCATCATTTTA
TGCGTCAAGATCTTACCCAGTCTCTAATCATGATTCAGCCTATTCTGTATGCATATTCTTTTAG
TGGACCACCAGAGCCGGTTCTTCTTGATAGCAGCAGCATTCTTGCAGATCGTATTCTTCTTATG
GACACATTCTTCCAGATTTTGATTTATCATGGTGAGACTATAGCACAGTGGCGGAAGTCAGGAT
ACCAAGACATGCCAGAATATGAAAATTTCCGTCACCTTCTGCAAGCCCCAGTAGATGATGCACA
GGAGATCCTTCACTCCAGATTTCCAATGCCAAGATATATTGACACCGAACATGGGGGCAGCCAG
GCTCGTTTCCTGCTTTCCAAAGTCAACCCTTCACAGACTCATAATAATATGTATGCCTGGGGGC
AGGAGTCTGGAGCACCCATCCTCACAGATGATGTTAGTTTACAAGTGTTTATGGATCACTTGAA
GAAACTTGCTGTGTCAAGTGCTGCTTGACATATGAAACATGTTAAAGACACTTAAGAAGATGAA
ATATTTCAGTTTCATTTTTTTCCCTTTTTCAGTTTGTCTGTGGAAACCAACAGATCTCTCTAGA
CTTTTTTTTTTGTATCAGTATGGTTTGAGAAAACATAAAAATGTTCACGTTTGTAGATAAAGCT
GGAATATAATGAGAGCATTGAGAACAAATTTGTTTTGCTTGCCACAGTATTATAACTGGTTTTA
GAATTTCAAAGTCTTTATAACTTAATTATGTTTAAGAGTAAAAATAGAGTCTGCCTTGTACAAC
AGATATAACTTATTTGTATATTGCAGACAAATCCAAGGTGGCACTGAATATCCTCACTGACCTT
TTAAAAACTTATTTAATTTTAGCCAGAAAGGAACAAATCAATAGTTGTGATAAATGTGAACATT
TTTTCTTATTTGTTGAATTTTTTTTAGTGATTTTCAGCATTTATGCATACACTTTTTCCTGTAG
TTTTTCTGGTAAGGCAGATTTATTCTATGATTTGTTTAGAAATTATCTGACTTTATAATGGCAA
TTTTCATGAAGATAATTTAATGTTTTTGATTATTTGGAAAAATTATTTAGAGATGAAAAATTTT
GGTGGGGGTAACATTCCCACAAATGACAATAAATGTGAAATTCCTACAAAGTACCTAACTTATG
TGACTAACCACAATAATTTCTTTTTAAAAAGGATACAGAAAATAAAGCATTTGGTTAGAGTGCA
TAAAGAAAGCCTTTGCAGTAAAATGACTATTGTAACTACTAAACCAAATTTGGTTTTCACTACT
CATTTTGTTGTTTTCCCTTCTTTTTCTGTGGTAAATTTTACATCATATCCTTCAGTATTTTAAC
ACTATTTTGGGAGTTTACATTTCTTATTTCTGCTTCCTTTGTGTGAACTTTATTAAGTTGTGGT
TCTTATTGAAACAGTATTATATAATGTTTAATTATGTCACGTGATGATACTTAGTTCTATTTTG
ATTTATTCATCAGTAACATTCGCTTTTACCTTTTAAAGTTTACTTATAGCAGATGTTTACATTG
CTAAAGCCAGATATGTTTTGACAATGAAATTTACATATCAAGTACTGCAAACGAAAGGTGGTGC
GCTGATATGTGCTTAGAAAGATAGTTCTGATGATTGTTACTTGCATGAACACAATCATATGATG
GTAAAACTTATAATTGTTATATTCAGTTTGCTTAAGTAAGTTCCATTTTATTTGAATTGAACTG
TGCTAGACCAAAATGCCAATAAAATATACTTTTCTCTGT

hide sequence

RefSeq Acc Id:

XM_040275300 ⟹ XP_040131234

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	49,137,896 - 49,187,189 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_013212917	(Get FASTA)	NCBI Sequence Viewer
	XP_021580390	(Get FASTA)	NCBI Sequence Viewer
	XP_040131234	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000012035.3
	ENSSTOP00000028674.1
GenBank Protein	KAG3261128	(Get FASTA)	NCBI Sequence Viewer
	KAG3261129	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013212917 ⟸ XM_013357463

- UniProtKB:

A0A287D571 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRT
TCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLRGPQMP
LIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGT
KDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQ
GKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDN
AKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQ
TFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKI
CGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQN
IAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSL
YPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSS
SILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPR
YIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA

hide sequence

RefSeq Acc Id:

XP_021580390 ⟸ XM_021724715

- UniProtKB:

A0A287D571 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRT
TCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLRGPQMP
LIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGT
KDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQ
GKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDN
AKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQ
TFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKI
CGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQN
IAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSL
YPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSS
SILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPR
YIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA

hide sequence

RefSeq Acc Id:	XP_040131234 ⟸ XM_040275300
- UniProtKB:	A0A287D571 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000028674 ⟸ ENSSTOT00000035960

RefSeq Acc Id:

ENSSTOP00000012035 ⟸ ENSSTOT00000013430

Protein Domains

Gelsolin-like Sec23/Sec24 beta-sandwich Sec23/Sec24 helical Sec23/Sec24 trunk Zinc finger Sec23/Sec24-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000013426	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000013430.3	UniProtKB/TrEMBL
	ENSSTOT00000035960.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.20.10	UniProtKB/TrEMBL
	3.40.50.410	UniProtKB/TrEMBL
	beta-sandwich domain of Sec23/24	UniProtKB/TrEMBL
	Sec23/Sec24 helical domain	UniProtKB/TrEMBL
	Zn-finger domain of Sec23/24	UniProtKB/TrEMBL
InterPro	ADF-H/Gelsolin-like_dom_sf	UniProtKB/TrEMBL
	Gelsolin-like_dom	UniProtKB/TrEMBL
	Gelsolin-like_dom_sf	UniProtKB/TrEMBL
	Sec23	UniProtKB/TrEMBL
	Sec23/24_helical_dom	UniProtKB/TrEMBL
	Sec23/24_helical_dom_sf	UniProtKB/TrEMBL
	Sec23/24_trunk_dom	UniProtKB/TrEMBL
	Sec23_24_beta_S	UniProtKB/TrEMBL
	Sec23_C	UniProtKB/TrEMBL
	vWFA_dom_sf	UniProtKB/TrEMBL
	Znf_Sec23_Sec24	UniProtKB/TrEMBL
	Znf_Sec23_Sec24_sf	UniProtKB/TrEMBL
NCBI Gene	Sec23a	ENTREZGENE
PANTHER	PROTEIN TRANSPORT PROTEIN SEC23A	UniProtKB/TrEMBL
	PTHR11141	UniProtKB/TrEMBL
Pfam	Gelsolin	UniProtKB/TrEMBL
	Sec23_BS	UniProtKB/TrEMBL
	Sec23_helical	UniProtKB/TrEMBL
	Sec23_trunk	UniProtKB/TrEMBL
	zf-Sec23_Sec24	UniProtKB/TrEMBL
Superfamily-SCOP	beta-sandwich domain of Sec23/24	UniProtKB/TrEMBL
	SSF53300	UniProtKB/TrEMBL
	SSF81811	UniProtKB/TrEMBL
	SSF82754	UniProtKB/TrEMBL
	SSF82919	UniProtKB/TrEMBL
UniProt	A0A287D571	ENTREZGENE, UniProtKB/TrEMBL
	I3ML00_ICTTR	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-12-15	Sec23a	SEC23 homolog A, COPII coat complex component	Sec23a	Sec23 homolog A, COPII coat complex component	Symbol and/or name change	5135510	APPROVED
2019-11-27	Sec23a	Sec23 homolog A, COPII coat complex component	Sec23a	Sec23 homolog A, coat complex II component	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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